def saveAnnotationUCSC():
utl.BED.saveBEDGraph(utl.loadSNPID()["ID"], color="0,0,0", name="dbSNP", fout_name=path + "dbSNP")
ann = (
pd.read_csv(utl.home + "storage/Data/Dmelanogaster/Hypoxia/popsss/all.ANN.csv", sep="\t")
.set_index(["CHROM", "POS"])
.loc[IH.replace({False: None}).dropna().index]
)
ann = ann.iloc[:, :3].reset_index().drop_duplicates().set_index(["CHROM", "POS"])
ann = ann.Annotation + "(" + ann.REF + ">" + ann.Allele + ")"
utl.BED.saveBEDGraph(ann, color="0,0,0", name="SNP effect", fout_name=path + "UCSC/effectSNP")
