def test_data_generator(self): FOV_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' LABEL_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' IMAGE_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' data_creator = Data(FOV_Path, LABEL_Path, IMAGE_Path,C, False) Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data' data_creator.create_data(Path) first_data_generator = itertools.cycle(D.data_generator(Path+r'\FOV', Path+r'\LABEL', Path+r'\IMAGE',0, 0)) for z in range(D.start_z, D.end_z): for x in range(D.start_xy, D.end_xy): for y in range(D.start_xy, D.end_xy): Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(x, i) self.assertEqual(y, j) self.assertEqual(z, k) self.assertEqual( np.sum(Fov-tiff.imread(r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\FOV\FOV_%d%d%d_%d_%d.tif'%(x,y,z,0,0))),0) self.assertEqual( np.sum(Label- tiff.imread(r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\LABEL\LABEL_%d%d%d.tif'%(x,y,z))),0) self.assertEqual( np.sum(Image- tiff.imread(r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\IMAGE\IMAGE_%d%d%d.tif'%(x,y,z))),0)
def test_createdata_SAME(self):
D = Data(imagepath, labelpath, promappath, C)
Path = r'C:\Users\sunzh\CS636\Summer project\BPN\data'
D.create_data(Path)
r_xy = int((D.size[0] - 1) / 2)
r_z = max(int((D.size[2] - 1) / 2), 1)
for x in range(r_xy, r_xy + D.cropped_size[0]):
for y in range(r_xy, r_xy + D.cropped_size[1]):
for z in range(r_z, r_z + D.cropped_size[2]):
self.assertTrue(
os.path.isfile(Path + r'\FOV\FOV_%d%d%d_0_0.tif' %
(x, y, z)))
self.assertTrue(
os.path.isfile(Path + r'\LABEL\LABEL_%d%d%d.tif' %
(x, y, z)))
print('2nd test case finished')
def test_data_exchange(self): FOV_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' LABEL_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' IMAGE_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\a.tif' data_creator = Data(FOV_Path, LABEL_Path, IMAGE_Path,C, False) Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data' data_creator.create_data(Path) D.data_exchange(Path+r'\FOV', 1, 0 ) first_data_generator = itertools.cycle(D.data_generator(Path+r'\FOV', Path+r'\LABEL', Path+r'\IMAGE',1, 0)) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 4) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 24) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 20) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 36) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 63) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 72) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 81) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 60) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 66) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 108) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 117) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 126) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 90) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 96) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 153) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 162) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 171) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 120) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 84) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 22*6) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 23*6) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 24*6) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 100)
def test_data_exchange_3d(self): C1 = Config() C1.field_of_view_scales = [3, 3, 3] C1.cropped_size = [5, 5, 3] D1 = data_generator.Data_Generator(C1) FOV_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\b.tif' LABEL_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\b.tif' IMAGE_Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data\b.tif' data_creator = Data(FOV_Path, LABEL_Path, IMAGE_Path,C1,False) Path = r'C:\Users\sunzh\CS636\Summer project\BPN\utils\test\test_data' data_creator.create_data(Path) print(data_creator.promap) D1.data_exchange(Path+r'\FOV', 1, 0 ) first_data_generator = itertools.cycle(D1.data_generator(Path+r'\FOV', Path+r'\LABEL', Path+r'\IMAGE',1, 0)) Fov, Label, Image, i, j, k = next(first_data_generator) print(Fov) self.assertEqual(np.sum(Fov), 8) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 24) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 36) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 48) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 40) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 72) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 7*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 8*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 9*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 120) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 11*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 12*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 13*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 14*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 15*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 16*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 17*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 18*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 19*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 20*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 21*8) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 22*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 23*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 24*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 25*8) #################### Ch2 Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 1*12) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 2*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 3*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 4*18) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 5*12) # Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 6*18) # Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 7*27) # Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 8*27) # Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 9*27) # Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 10*6*3) Fov, Label, Image, i, j, k = next(first_data_generator) self.assertEqual(np.sum(Fov), 11*6*3)
