Python VcfPlugin._format_variantsの例

コード例 #1

ファイル: test_vcf_variant_mixin.py プロジェクト: J35P312/puzzle

def test_format_variants(cyvcf_variant, case_obj, header):
    vcf_plugin = VcfPlugin()
    vcf_plugin.head = header
    vcf_plugin.vep_header = header.vep_columns
    vcf_plugin.snpeff_header = header.snpeff_columns

    variant_obj = vcf_plugin._format_variants(cyvcf_variant, index=1,
                             case_obj=case_obj, add_all_info=False)

    assert variant_obj.CHROM == cyvcf_variant.CHROM
    assert variant_obj.start == cyvcf_variant.start

コード例 #2

def test_format_variants(cyvcf_variant, case_obj, header):
    vcf_plugin = VcfPlugin()
    vcf_plugin.head = header
    vcf_plugin.vep_header = header.vep_columns
    vcf_plugin.snpeff_header = header.snpeff_columns

    variant_obj = vcf_plugin._format_variants(cyvcf_variant, index=1,
                             case_obj=case_obj, add_all_info=False)

    assert variant_obj.CHROM == cyvcf_variant.CHROM
    assert variant_obj.start == cyvcf_variant.start