def test_format_variants(cyvcf_variant, case_obj, header): vcf_plugin = VcfPlugin() vcf_plugin.head = header vcf_plugin.vep_header = header.vep_columns vcf_plugin.snpeff_header = header.snpeff_columns variant_obj = vcf_plugin._format_variants(cyvcf_variant, index=1, case_obj=case_obj, add_all_info=False) assert variant_obj.CHROM == cyvcf_variant.CHROM assert variant_obj.start == cyvcf_variant.start