options = {}
class configurator_type(NXGraphConfigurator):
node_type = Node
node_options = {
'infection_rate', 'recovery_rate', 'initial_infected_fraction'
}
def initialize_nodes(self):
infected_fraction = self.full_parameters[
'initial_infected_fraction']
infected_population_size = int(
math.ceil(len(self.node_identifiers) * infected_fraction))
infected_nodes = set(
random.sample(self.node_identifiers, infected_population_size))
self.sync_send_all(self.node_identifiers,
'initialize',
state=lambda rid: 'I'
if (rid in infected_nodes) else 'S')
if __name__ == '__main__':
graph = networkx.powerlaw_cluster_graph(1000, 50, 0.2)
sim = Simulation()
sim.run(starting_graph=graph, force_cli=True)
print sim.motive
network_size = sim.graph.number_of_nodes()
sim.recorder.save_statistic()
node_type = Node
node_options = {"infection_rate", "recovery_rate"}
def initialize_nodes(self):
infected_rate = self.full_parameters["initial_infected_rate"]
infected_population_size = int(math.ceil(len(self.node_identifiers) * infected_rate))
infected_nodes = set(random.sample(self.node_identifiers, infected_population_size))
self.sync_send_all(
self.node_identifiers, "initialize", state=lambda rid: ("I" if (rid in infected_nodes) else "S")
)
def bench_mem(timeout, filename="meliae-dump-"):
try:
from meliae import scanner
import time
except ImportError:
pass
else:
gevent.sleep(timeout)
scanner.dump_all_objects("%s%d.json" % (filename, time.clock()))
if __name__ == "__main__":
sim = Simulation()
# gevent.spawn(bench_mem, 60.0 * 30.0)
sim.run(force_cli=True)
print sim.motive
def initialize_nodes(self):
infected_rate = self.full_parameters['initial_infected_rate']
infected_population_size = int(
math.ceil(len(self.node_identifiers) * infected_rate))
infected_nodes = set(
random.sample(self.node_identifiers, infected_population_size))
self.sync_send_all(self.node_identifiers,
'initialize',
state=lambda rid:
('I' if (rid in infected_nodes) else 'S'))
def bench_mem(timeout, filename='meliae-dump-'):
try:
from meliae import scanner
import time
except ImportError:
pass
else:
gevent.sleep(timeout)
scanner.dump_all_objects('%s%d.json' % (filename, time.clock()))
if __name__ == '__main__':
sim = Simulation()
#gevent.spawn(bench_mem, 60.0 * 30.0)
sim.run(force_cli=True)
print sim.motive
)
activator_type = Activator
options = {}
class configurator_type(NXGraphConfigurator):
node_type = Node
node_options = {
'infection_rate',
'recovery_rate',
'initial_infected_fraction'}
def initialize_nodes(self):
infected_fraction = self.full_parameters['initial_infected_fraction']
infected_population_size = int(
math.ceil(len(self.node_identifiers) * infected_fraction))
infected_nodes = set(random.sample(self.node_identifiers, infected_population_size))
self.sync_send_all(self.node_identifiers, 'initialize',
state=lambda rid: 'I' if (rid in infected_nodes) else 'S')
if __name__ == '__main__':
graph = networkx.powerlaw_cluster_graph(1000, 50, 0.2)
sim = Simulation()
sim.run(starting_graph=graph, force_cli=True)
print sim.motive
network_size = sim.graph.number_of_nodes()
sim.recorder.save_statistic()
