options = {} class configurator_type(NXGraphConfigurator): node_type = Node node_options = { 'infection_rate', 'recovery_rate', 'initial_infected_fraction' } def initialize_nodes(self): infected_fraction = self.full_parameters[ 'initial_infected_fraction'] infected_population_size = int( math.ceil(len(self.node_identifiers) * infected_fraction)) infected_nodes = set( random.sample(self.node_identifiers, infected_population_size)) self.sync_send_all(self.node_identifiers, 'initialize', state=lambda rid: 'I' if (rid in infected_nodes) else 'S') if __name__ == '__main__': graph = networkx.powerlaw_cluster_graph(1000, 50, 0.2) sim = Simulation() sim.run(starting_graph=graph, force_cli=True) print sim.motive network_size = sim.graph.number_of_nodes() sim.recorder.save_statistic()
node_type = Node node_options = {"infection_rate", "recovery_rate"} def initialize_nodes(self): infected_rate = self.full_parameters["initial_infected_rate"] infected_population_size = int(math.ceil(len(self.node_identifiers) * infected_rate)) infected_nodes = set(random.sample(self.node_identifiers, infected_population_size)) self.sync_send_all( self.node_identifiers, "initialize", state=lambda rid: ("I" if (rid in infected_nodes) else "S") ) def bench_mem(timeout, filename="meliae-dump-"): try: from meliae import scanner import time except ImportError: pass else: gevent.sleep(timeout) scanner.dump_all_objects("%s%d.json" % (filename, time.clock())) if __name__ == "__main__": sim = Simulation() # gevent.spawn(bench_mem, 60.0 * 30.0) sim.run(force_cli=True) print sim.motive
def initialize_nodes(self): infected_rate = self.full_parameters['initial_infected_rate'] infected_population_size = int( math.ceil(len(self.node_identifiers) * infected_rate)) infected_nodes = set( random.sample(self.node_identifiers, infected_population_size)) self.sync_send_all(self.node_identifiers, 'initialize', state=lambda rid: ('I' if (rid in infected_nodes) else 'S')) def bench_mem(timeout, filename='meliae-dump-'): try: from meliae import scanner import time except ImportError: pass else: gevent.sleep(timeout) scanner.dump_all_objects('%s%d.json' % (filename, time.clock())) if __name__ == '__main__': sim = Simulation() #gevent.spawn(bench_mem, 60.0 * 30.0) sim.run(force_cli=True) print sim.motive
) activator_type = Activator options = {} class configurator_type(NXGraphConfigurator): node_type = Node node_options = { 'infection_rate', 'recovery_rate', 'initial_infected_fraction'} def initialize_nodes(self): infected_fraction = self.full_parameters['initial_infected_fraction'] infected_population_size = int( math.ceil(len(self.node_identifiers) * infected_fraction)) infected_nodes = set(random.sample(self.node_identifiers, infected_population_size)) self.sync_send_all(self.node_identifiers, 'initialize', state=lambda rid: 'I' if (rid in infected_nodes) else 'S') if __name__ == '__main__': graph = networkx.powerlaw_cluster_graph(1000, 50, 0.2) sim = Simulation() sim.run(starting_graph=graph, force_cli=True) print sim.motive network_size = sim.graph.number_of_nodes() sim.recorder.save_statistic()