def _writeXmippCoords(self, coordSet): micSet = self.getInputMicrographs() coordPath = self._getTmpPath('xmipp_coordinates') pwutils.cleanPath(coordPath) pwutils.makePath(coordPath) import pyworkflow.em.packages.xmipp3 as xmipp3 micPath = micSet.getFileName() xmipp3.writeSetOfCoordinates(coordPath, coordSet, ismanual=False) return micPath, coordPath
def _writeXmippCoords(self, coordSet): micSet = self.getInputMicrographs() coordPath = self._getTmpPath('xmipp_coordinates') pwutils.cleanPath(coordPath) pwutils.makePath(coordPath) import pyworkflow.em.packages.xmipp3 as xmipp3 micPath = os.path.join(coordPath, 'micrographs.xmd') xmipp3.writeSetOfMicrographs(micSet, micPath) xmipp3.writeSetOfCoordinates(coordPath, coordSet) return micPath, coordPath