def study_delete_req(study_id, user_id):
"""Delete a given study
Parameters
----------
study_id : int
Study id to delete
user_id : str
User requesting the deletion
Returns
-------
dict
Status of deletion, in the format
{status: status,
message: message}
"""
access_error = check_access(study_id, user_id)
if access_error:
return access_error
status = 'success'
try:
Study.delete(int(study_id))
msg = ''
except Exception as e:
status = 'error'
msg = 'Unable to delete study: %s' % str(e)
return {'status': status, 'message': msg}
def study_delete_req(study_id, user_id):
"""Delete a given study
Parameters
----------
study_id : int
Study id to delete
user_id : str
User requesting the deletion
Returns
-------
dict
Status of deletion, in the format
{status: status,
message: message}
"""
access_error = check_access(study_id, user_id)
if access_error:
return access_error
status = 'success'
try:
Study.delete(int(study_id))
msg = ''
except Exception as e:
status = 'error'
msg = 'Unable to delete study: %s' % str(e)
return {
'status': status,
'message': msg
}
def delete_study(self, study, user, callback):
"""Delete study
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done and it fails
"""
study_id = study.id
study_title = study.title
try:
Study.delete(study_id)
# redirecting to list but also passing messages
# we need to change the request.method to GET
self.request.method = 'GET'
ListStudiesHandler(self.application, self.request)._execute(
[t(self.request) for t in self.application.transforms],
message=('Study "%s" has been deleted' % study_title),
msg_level='success')
except Exception as e:
msg = "Couldn't remove study %d: %s" % (study_id, str(e))
msg_level = "danger"
callback((msg, msg_level, 'study_information_tab', None, None))
def delete_study(self, study, user, callback):
"""Delete study
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done and it fails
"""
study_id = study.id
study_title = study.title
try:
Study.delete(study_id)
# redirecting to list but also passing messages
# we need to change the request.method to GET
self.request.method = 'GET'
ListStudiesHandler(self.application, self.request)._execute(
[t(self.request) for t in self.application.transforms],
message=('Study "%s" has been deleted' % study_title),
msg_level='success')
except Exception as e:
msg = "Couldn't remove study %d: %s" % (study_id, str(e))
msg_level = "danger"
callback((msg, msg_level, 'study_information_tab', None, None))
def tearDown(self):
for fp in self._clean_up_files:
if exists(fp):
remove(fp)
study_id = self.new_study.id
for pt in self.new_study.prep_templates():
PrepTemplate.delete(pt.id)
if SampleTemplate.exists(study_id):
SampleTemplate.delete(study_id)
Study.delete(study_id)
def test_delete(self):
title = "Fried chicken microbiome"
study = Study.create(User('*****@*****.**'), title, [1], self.info)
study.delete(study.id)
self.assertFalse(study.exists(title))
with self.assertRaises(QiitaDBError):
Study.delete(1)
with self.assertRaises(QiitaDBUnknownIDError):
Study.delete(41)
def tearDown(self):
for fp in self._clean_up_files:
if exists(fp):
remove(fp)
study_id = self.new_study.id
for pt in self.new_study.prep_templates():
PrepTemplate.delete(pt.id)
if SampleTemplate.exists(study_id):
SampleTemplate.delete(study_id)
Study.delete(study_id)
def test_delete(self):
title = "Fried chicken microbiome"
# the study is assigned to investigation 1
study = Study.create(User("*****@*****.**"), title, [1], self.info, Investigation(1))
# sharing with other user
study.share(User("*****@*****.**"))
study.delete(study.id)
self.assertFalse(study.exists(title))
with self.assertRaises(QiitaDBError):
Study.delete(1)
with self.assertRaises(QiitaDBUnknownIDError):
Study.delete(41)
