def get(self):
study_title = self.get_argument('study_title', None)
old_study_title = self.get_argument('old_study_title', None)
if study_title is None:
to_write = False
elif study_title == old_study_title:
to_write = True
else:
to_write = False if Study.exists(study_title) else True
self.write(str(to_write))
def get(self):
study_title = self.get_argument('study_title', None)
old_study_title = self.get_argument('old_study_title', None)
if study_title is None:
to_write = False
elif study_title == old_study_title:
to_write = True
else:
to_write = False if Study.exists(study_title) else True
self.write(str(to_write))
def get(self):
study_title = self.get_argument('study_title', None)
old_study_title = self.get_argument('old_study_title', None)
if study_title is None:
self.write('False')
return
if old_study_title and study_title == old_study_title:
self.write('True')
return
self.write('False' if Study.exists(study_title) else 'True')
def test_exists(self):
self.assertTrue(Study.exists('Identification of the Microbiomes for '
'Cannabis Soils'))
self.assertFalse(Study.exists('Not Cannabis Soils'))
def test_exists(self):
self.assertTrue(
Study.exists('Identification of the Microbiomes for '
'Cannabis Soils'))
self.assertFalse(Study.exists('Not Cannabis Soils'))
def post(self):
try:
payload = json_decode(self.request.body)
except ValueError:
self.fail('Could not parse body', 400)
return
required = {
'title', 'study_abstract', 'study_description', 'study_alias',
'owner', 'contacts'
}
if not required.issubset(payload):
self.fail('Not all required arguments provided', 400)
return
title = payload['title']
study_abstract = payload['study_abstract']
study_desc = payload['study_description']
study_alias = payload['study_alias']
notes = payload['notes']
owner = payload['owner']
if not User.exists(owner):
self.fail('Unknown user', 403)
return
else:
owner = User(owner)
contacts = payload['contacts']
if Study.exists(title):
self.fail('Study title already exists', 409)
return
pi_name = contacts['principal_investigator'][0]
pi_aff = contacts['principal_investigator'][1]
if not StudyPerson.exists(pi_name, pi_aff):
self.fail('Unknown principal investigator', 403)
return
else:
pi = StudyPerson.from_name_and_affiliation(pi_name, pi_aff)
lp_name = contacts['lab_person'][0]
lp_aff = contacts['lab_person'][1]
if not StudyPerson.exists(lp_name, lp_aff):
self.fail('Unknown lab person', 403)
return
else:
lp = StudyPerson.from_name_and_affiliation(lp_name, lp_aff)
info = {
'lab_person_id': lp,
'principal_investigator_id': pi,
'study_abstract': study_abstract,
'study_description': study_desc,
'study_alias': study_alias,
'notes': notes,
# TODO: we believe it is accurate that mixs is false and
# metadata completion is false as these cannot be known
# at study creation here no matter what.
# we do not know what should be done with the timeseries.
'mixs_compliant': False,
'metadata_complete': False,
'timeseries_type_id': 1
}
study = Study.create(owner, title, info)
self.set_status(201)
self.write({'id': study.id})
self.finish()
def test_exists(self):
self.assertTrue(Study.exists("Identification of the Microbiomes for " "Cannabis Soils"))
self.assertFalse(Study.exists("Not Cannabis Soils"))
