def main(args): description = ('Calculates dG for alignmnets in results in ' 'mbr file add floating point energy values to ' 'the end of each m8record. Results are saved ' 'to <mbr file>.dG') parser = OptionParser(('usage: %prog [options] ' '<mbr file> <query path> ' '<database path>'), description=description) (options, args) = parser.parse_args(args) if len(args) < 3: print >> sys.stderr, ('Usage error: all arguments are ' 'required') print >> sys.stderr, parser.format_help() return 1 inMBR = args[0] qPath = args[1] dbPath = args[2] oPath = inMBR + '.dG' B.m8alignmentEnergies(inMBR,qPath,dbPath,oPath)
def main(args): description = ('Calculates dG for alignmnets in results in ' 'D1 megaBLAST results file and outputs floating' 'point energy values one per line ' 'to <mbr file>.dG') parser = OptionParser(('usage: %prog [options] ' '<mbr file> <query path> ' '<database path>'), description=description) (options, args) = parser.parse_args(args) if len(args) < 3: print >> sys.stderr, ('Usage error: all arguments are ' 'required') print >> sys.stderr, parser.format_help() return 1 inMBR = args[0] qPath = args[1] dbPath = args[2] oPath = inMBR + '.dG' B.m8alignmentEnergies(inMBR,qPath,dbPath,oPath,isD1format=True)
def main(args): description = ( "Calculates dG for alignmnets in results in " "D1 megaBLAST results file and outputs floating" "point energy values one per line " "to <mbr file>.dG" ) parser = OptionParser( ("usage: %prog [options] " "<mbr file> <query path> " "<database path>"), description=description ) (options, args) = parser.parse_args(args) if len(args) < 3: print >>sys.stderr, ("Usage error: all arguments are " "required") print >>sys.stderr, parser.format_help() return 1 inMBR = args[0] qPath = args[1] dbPath = args[2] oPath = inMBR + ".dG" B.m8alignmentEnergies(inMBR, qPath, dbPath, oPath, isD1format=True, lazyDict=False)