def main(args):
description = ('Calculates dG for alignmnets in results in '
'mbr file add floating point energy values to '
'the end of each m8record. Results are saved '
'to <mbr file>.dG')
parser = OptionParser(('usage: %prog [options] '
'<mbr file> <query path> '
'<database path>'),
description=description)
(options, args) = parser.parse_args(args)
if len(args) < 3:
print >> sys.stderr, ('Usage error: all arguments are '
'required')
print >> sys.stderr, parser.format_help()
return 1
inMBR = args[0]
qPath = args[1]
dbPath = args[2]
oPath = inMBR + '.dG'
B.m8alignmentEnergies(inMBR,qPath,dbPath,oPath)
def main(args):
description = ('Calculates dG for alignmnets in results in '
'D1 megaBLAST results file and outputs floating'
'point energy values one per line '
'to <mbr file>.dG')
parser = OptionParser(('usage: %prog [options] '
'<mbr file> <query path> '
'<database path>'),
description=description)
(options, args) = parser.parse_args(args)
if len(args) < 3:
print >> sys.stderr, ('Usage error: all arguments are '
'required')
print >> sys.stderr, parser.format_help()
return 1
inMBR = args[0]
qPath = args[1]
dbPath = args[2]
oPath = inMBR + '.dG'
B.m8alignmentEnergies(inMBR,qPath,dbPath,oPath,isD1format=True)
def main(args):
description = (
"Calculates dG for alignmnets in results in "
"D1 megaBLAST results file and outputs floating"
"point energy values one per line "
"to <mbr file>.dG"
)
parser = OptionParser(
("usage: %prog [options] " "<mbr file> <query path> " "<database path>"), description=description
)
(options, args) = parser.parse_args(args)
if len(args) < 3:
print >>sys.stderr, ("Usage error: all arguments are " "required")
print >>sys.stderr, parser.format_help()
return 1
inMBR = args[0]
qPath = args[1]
dbPath = args[2]
oPath = inMBR + ".dG"
B.m8alignmentEnergies(inMBR, qPath, dbPath, oPath, isD1format=True, lazyDict=False)
