def align_clustalo(self):
"""Step 1 with clustalo"""
self.centers_aligned.remove()
sh.clustalo('-i', self.tax.centers, '--profile1', reference, '-o',
self.clustalo_aligned, '--threads', 16)
def align():
"""A function to align the silvamod 16S database"""
sh.clustalo("-i", amplified, "-o", aligned)
def align():
"""A function to align the silvamod 16S database"""
sh.clustalo('-i', amplified, '-o', aligned)
def align_clustalo(self):
"""Step 1 with clustalo"""
self.centers_aligned.remove()
sh.clustalo('-i', self.tax.centers, '--profile1', reference, '-o', self.clustalo_aligned, '--threads', 16)
