def align_clustalo(self): """Step 1 with clustalo""" self.centers_aligned.remove() sh.clustalo('-i', self.tax.centers, '--profile1', reference, '-o', self.clustalo_aligned, '--threads', 16)
def align(): """A function to align the silvamod 16S database""" sh.clustalo("-i", amplified, "-o", aligned)
def align(): """A function to align the silvamod 16S database""" sh.clustalo('-i', amplified, '-o', aligned)