def main():
args = parse_args()
with VarScan(args.input_uri, args.output_uri) as smart_tool:
smart_tool.base_commands = BASE_COMMANDS
smart_tool.outputs = OUTPUTS
smart_tool(args.identifier)
def main():
args = parse_args()
with StringtieAssembleTranscripts(args.input_uri,
args.output_uri) as smart_tool:
smart_tool.base_commands = BASE_COMMANDS
smart_tool.outputs = OUTPUTS
smart_tool(args.identifier)
def main():
args = parse_args()
with FastQC(args.input_uri, args.output_uri) as smart_tool:
smart_tool.base_commands = BASE_COMMANDS
smart_tool(args.identifier)