def __create_worklist_series(self): # Generates the buffer transfer worklists. self.add_debug('Create worklist series ...') if self.create_pool_racks: pool_buf_vol = get_pool_buffer_volume() prep_trf_vol = get_preparation_plate_transfer_volume( preparation_plate_volume= self.preparation_plate_volume) prep_buf_vol = self.preparation_plate_volume - prep_trf_vol else: pool_buf_vol = None prep_buf_vol = \ self.preparation_plate_volume \ - self.__stock_transfer_volume * self.number_designs generator = LibraryCreationWorklistGenerator( self.__base_layout, self.__stock_concentration, self.library_name, prep_buf_vol, pool_buffer_volume=pool_buf_vol, parent=self) self.__worklist_series = generator.get_result() if self.__worklist_series is None: msg = 'Error when trying to generate worklist series.' self.add_error(msg)
def __create_worklist_series(self): # Generates the buffer transfer worklists. self.add_debug("Create worklist series ...") if self.create_pool_racks: pool_buf_vol = get_pool_buffer_volume() prep_trf_vol = get_preparation_plate_transfer_volume(preparation_plate_volume=self.preparation_plate_volume) prep_buf_vol = self.preparation_plate_volume - prep_trf_vol else: pool_buf_vol = None prep_buf_vol = self.preparation_plate_volume - self.__stock_transfer_volume * self.number_designs generator = LibraryCreationWorklistGenerator( self.__base_layout, self.__stock_concentration, self.library_name, prep_buf_vol, pool_buffer_volume=pool_buf_vol, parent=self, ) self.__worklist_series = generator.get_result() if self.__worklist_series is None: msg = "Error when trying to generate worklist series." self.add_error(msg)
def __write_pool_creation_section(self): # This is the stock transfer part (creating pools from single molecule # designs). self.add_debug('Writing pool section.') self._write_headline(header_text=self.HEADER_POOL_CREATION, preceding_blank_lines=0) lines = [] volume_line = self.VOLUME_LINE \ % get_pool_transfer_volume(number_designs= self.iso.iso_request.number_designs) volume_line += ' each' lines.append(volume_line) buffer_line = self.BUFFER_LINE % get_pool_buffer_volume() lines.append(buffer_line) for sector_index in sorted(self.single_stock_rack_map.keys()): lines.append('') lines.append(self.QUADRANT_LINE % (sector_index + 1)) barcodes = self.single_stock_rack_map[sector_index] target_rack = self.pool_stock_rack_map[sector_index] src_line = self.SOURCE_LINE_PLURAL % (', '.join(sorted(barcodes))) lines.append(src_line) lines.append(self.TARGET_LINE % (target_rack)) self._write_body_lines(lines)