SampleId = GetSampleId(uc.QueryLabel)
if SampleId not in SampleIds:
SampleIds.append(SampleId)
N = fasta.GetSizeFromLabel(uc.QueryLabel, 1)
try:
OTUTable[OTUId][SampleId] += N
except:
OTUTable[OTUId][SampleId] = N
OTUIds = []
SampleIds = []
OTUTable = {}
uc.ReadRecs(FileName, OnRec)
s = "OTUId"
for SampleId in SampleIds:
s += "\t" + SampleId
print s
for OTUId in OTUIds:
s = OTUId
for SampleId in SampleIds:
try:
n = OTUTable[OTUId][SampleId]
except:
n = 0
s += "\t" + str(n)
print s
SampleId = GetSampleId(uc.QueryLabel)
if SampleId not in SampleIds:
SampleIds.append(SampleId)
N = fasta.GetSizeFromLabel(uc.QueryLabel, 1)
try:
OTUTable[OTUId][SampleId] += N
except:
OTUTable[OTUId][SampleId] = N
OTUIds = []
SampleIds = []
OTUTable = {}
uc.ReadRecs(ucFileName, OnRec)
fout = open(outFileName, 'wb')
s = "OTUId"
for SampleId in SampleIds:
s += "\t" + SampleId
#print s
fout.write("%s\n" % s)
for OTUId in OTUIds:
s = OTUId
for SampleId in SampleIds:
try:
n = OTUTable[OTUId][SampleId]
except: