Python ReadRecs示例

示例#1

    SampleId = GetSampleId(uc.QueryLabel)
    if SampleId not in SampleIds:
        SampleIds.append(SampleId)

    N = fasta.GetSizeFromLabel(uc.QueryLabel, 1)
    try:
        OTUTable[OTUId][SampleId] += N
    except:
        OTUTable[OTUId][SampleId] = N


OTUIds = []
SampleIds = []
OTUTable = {}

uc.ReadRecs(FileName, OnRec)

s = "OTUId"
for SampleId in SampleIds:
    s += "\t" + SampleId
print s

for OTUId in OTUIds:
    s = OTUId
    for SampleId in SampleIds:
        try:
            n = OTUTable[OTUId][SampleId]
        except:
            n = 0
        s += "\t" + str(n)
    print s

示例#2

    SampleId = GetSampleId(uc.QueryLabel)
    if SampleId not in SampleIds:
        SampleIds.append(SampleId)

    N = fasta.GetSizeFromLabel(uc.QueryLabel, 1)
    try:
        OTUTable[OTUId][SampleId] += N
    except:
        OTUTable[OTUId][SampleId] = N


OTUIds = []
SampleIds = []
OTUTable = {}

uc.ReadRecs(ucFileName, OnRec)

fout = open(outFileName, 'wb')

s = "OTUId"
for SampleId in SampleIds:
    s += "\t" + SampleId
#print s
fout.write("%s\n" % s)

for OTUId in OTUIds:
    s = OTUId
    for SampleId in SampleIds:
        try:
            n = OTUTable[OTUId][SampleId]
        except: