def max_ent(self, string):
'''
score function for motifs that are found by maxent (splice acceptors
and donors. like all score functions, returns nmers, locations, scores
'''
# print "Pre-score Subprocess state for {}: {}".format(self.type,self.p.poll())
nmers, locations = util.generate_nmers(string, self.bounds)
scores = self.call_max_ent(nmers)
# print "Post-score Subprocess state for {}: {}".format(self.type, self.p.poll())
# print "\tDid we get scores? {}".format(len(scores) > 0)
return {'nmers': nmers, 'locations': locations, 'scores': scores}
def generate_nmers(self, bounds):
return util.generate_nmers(self.seq, bounds)
