def runCoexistence(self, N, r, d, K, b1, b2):
timeUntilDeath = 0
survivor = 0
population = Population(0, mutationON=False)
population.addIndividual(r, d, N, b1, K, resident=True)
population.addIndividual(r, d, N, b2, K, resident=False)
while population.residentinvaderPresent():
population.updatePopulation(1)
timeUntilDeath += 1
if population.residentPresent(): survivor = 1
if population.invaderPresent(): survivor = 2
return ma.log10(timeUntilDeath), survivor
def runInvasion(self, repetitions, delay, dataTime, N1, N2, r, d, K, b1, b2):
#: Function for running the invasion
#: @param repetitions: repetitions
#: @return: returns the fraction of runs in which the invader was successful
invasion = 0
for rep in range(0,repetitions):
population = Population(0, mutationON=False)
population.addIndividual(r, d, N1, b1, K, resident=True)
population.updatePopulation(delay)
population.addIndividual(r, d, N2, b2, K, resident=False)
population.updatePopulation(dataTime)
if population.invaderPresent(): invasion += 1.0
return invasion / repetitions
def runMutationdevelopment_independentPopulations(self, N, r, d, K, b1, b2, m):
bValues = np.zeros((15000,3))
time = 1
resultPosition = 0
population1 = Population(m, mutationON=False)
population1.addIndividual(r, d, N, b1, K, resident=True)
population2 = Population(m, mutationON=False)
population2.addIndividual(r, d, N, b2, K, resident=True)
while time <= 30000:
population1.updatePopulation(1)
population2.updatePopulation(1)
if time % 100 == 1:
bValues[resultPosition] = [time, population1.getAverageB(), population2.getAverageB()]
resultPosition += 1
time += 1
population1.mutationON = True
population2.mutationON = True
while time <= 150000:
population1.updatePopulation(1)
population2.updatePopulation(1)
if time % 100 == 1:
bValues[resultPosition] = [time, population1.getAverageB(), population2.getAverageB()]
resultPosition += 1
time += 1
return bValues
def runMutationdevelopment_coexistingCommunity(self, N, r, d, K, b1, b2, m):
bValues = np.zeros((15000,3))
time = 1
resultPosition = 0
population = Population(m, mutationON=False)
population.addIndividual(r, d, N, b1, K, resident=True)
population.addIndividual(r, d, N, b2, K, resident=False)
while time <= 30000:
population.updatePopulation(1)
if time % 100 == 1:
bValues[resultPosition]= [time, population.getResidentAverageB(),population.getInvaderAverageB()]
resultPosition += 1
time += 1
population.mutationON = True
while time <= 150000:
population.updatePopulation(1)
if time % 100 == 1:
bValues[resultPosition] = [time, population.getResidentAverageB(),population.getInvaderAverageB()]
resultPosition += 1
time += 1
return bValues