def compare(args):
print "Inside compare with args:"
print 'First: {0}'.format(args.first)
print 'Second: {0}'.format(args.second)
compr = Comparator(args.first, args.second)
return compr.compare()
pass
def compare():
t0 = time.clock()
print("Beginning comparison...")
comparator = Comparator("/home/arts/Documents/originalReads", "/home/arts/Documents/alignedReads", "/home/arts/Documents/correctedReads.gz",
"/home/arts/Documents/failedToAlignReads", "/home/arts/Documents/report")
comparator.compare()
print("Comparison finished. Took: %s." % (time.clock() - t0))
return None
def runGenerator(args):
generator = Generator(args.n, args.l, args.d)
profiles = generator.generate_profiles()
comparator = Comparator(profiles)
print 'Prim:'
print comparator.goeBURST('prim')
print 'Kruskal:'
print comparator.goeBURST('kruskal')
def main():
start_state = State([
0, 2, 3,
4, 6, 1,
7, 5, 8
])
goal_state = State([
1, 2, 3,
4, 5, 6,
7, 8, 0
])
comparator = Comparator(goal_state)
start = time.time()
result = ids(start_state, goal_state)
# result = a_star(start_state, goal_state, comparator)
end = time.time()
totaltime = end - start
if result is None:
print("No solution found")
elif result == []:
print("Start node was the goal!")
else:
print("The number of nodes visited", result.get("number_of_nodes_visited"))
print("Max number of nodes stored in memory:", result.get("max_number_of_nodes"))
print("including:")
print(" ", result.get('number_of_explored'), "explored nodes")
print(" ", result.get('number_of_nodes'), "nodes that have to be explored")
print(f"Number of moves: {len(result.get('path_from_start'))}")
print("States of moves are as follows:", result.get("path_from_start"))
print(f"Total searching time: {round(totaltime, 5)} seconds")
def run(self):
futils = FileUtils(filename="./data/normalized_training_data_2.csv",
skip_header=True,
whitespace_delim=True)
comp = Comparator(reference_dict=futils.get_arrays_from_csv(),
start_comparison_col=2)
predictions = []
test_file = FileUtils(filename="./data/normalized_test_data_2.csv",
skip_header=True,
whitespace_delim=True)
for test_record in test_file.get_arrays_from_csv():
match = comp.get_closes_match(test_record)
print("Closes match for {0} is {1}".format(test_record, match))
predictions.append("{0},{1}".format(int(test_record[0]),
int(match[1])))
for p in predictions:
print(p)
def Solve(self, problem):
print("Starting Solver for problem %s\n" % problem.name)
processor = VisualProcessor(problem.figures, problem.problemType)
compare = Comparator(processor)
compare.CreateGraphNodes()
proposedAnswers = compare.GetSolutions()
if proposedAnswers == None or len(proposedAnswers) <= 0:
return -1
answers = []
for answer in proposedAnswers:
ans = proposedAnswers[answer][0]
val = proposedAnswers[answer][1]
print "\tAnswer for " + answer + " method: [" + str(
ans) + ", " + str(val) + "]"
answers.append(proposedAnswers[answer][0])
answerCounts = []
for i in range(0, processor.numAnswers):
answerCounts.append(answers.count(i))
#solver.OutputImageCombinations(problem.name)
if np.all(np.array(answerCounts) <= 1):
return -1
maxCounts = np.max(answerCounts)
indexes = np.argwhere(answerCounts == maxCounts)
indexes = list(indexes.flatten())
if len(indexes) > 1:
return -1
#bestAns = -1
#bestDist = float('inf')
#for answer in proposedAnswers:
# for i in indexes:
# if proposedAnswers[answer][0]==i and proposedAnswers[answer][1] < bestDist:
# bestDist = proposedAnswers[answer][1]
# bestAns = proposedAnswers[answer][0]
#agreedAnswer = bestAns
else:
agreedAnswer = indexes[0]
return agreedAnswer + 1
def test_best_match_non_trivial(self):
a = [[870, 1, 3, 0.134684136, 1, 1, 0.021730754, 0],
[871, 0, 3, 0.875446884, 0, 0, 0.015411575, 0],
[872, 1, 1, 1.582538598, 1, 1, 0.102578967, 0],
[873, 0, 1, 1.111144122, 0, 0, 0.00975935, 0],
[874, 0, 3, 1.582538598, 0, 0, 0.01756683, 0],
[875, 1, 2, 0.942788952, 1, 0, 0.04684488, 1],
[876, 1, 3, 0.50506551, 0, 0, 0.014102261, 1],
[877, 0, 3, 0.67342068, 0, 0, 0.019217722, 0],
[878, 0, 3, 0.639749646, 0, 0, 0.015411575, 0]]
comp = Comparator(a, 2)
a1 = comp.get_closes_match(
[0, 0, 1, 1.582538598, 1, 1, 0.102578967, 0])
print("Match ID: {0}".format(int(a1[0])))
self.assertTrue(int(a1[0]) == 872)
a2 = comp.get_closes_match([0, 0, 3, 0.50506559, 0, 0, 0.014102261, 1])
print("Match ID: {0}".format(int(a2[0])))
self.assertTrue(int(a2[0]) == 876)
def __init__(self, algorithm, stop_event, options, compare=None):
self.stopEvent = stop_event
self.numLines = options.numLines
self.width = options.width
self.compare = compare
self.stop = False
self.cstop = compare == None
self.items = Orderable(self.numLines)
self.cmp = Comparator(self.items)
self.markers = Markers()
algorithm.initialize(self.cmp, self.items, self.markers)
self.gen = algorithm.sort()
if compare != None:
self.citems = copy.deepcopy(self.items)
self.ccmp = Comparator(self.citems)
self.cmarkers = Markers()
compare.initialize(self.ccmp, self.citems, self.cmarkers)
self.cgen = compare.sort()
pygame.init()
if compare == None:
self.window = pygame.display.set_mode(
(self.width, 6 * (self.numLines + 1)))
else:
self.window = pygame.display.set_mode(
(self.width * 2 + 5, 6 * (self.numLines + 1)))
self.i = 0
self.update()
def test_001_t(self):
"""
Defined source data for three incoming port
For one port src_data0
For N port src_data0,src_data1,src_data2,.......,src_dataN.
"""
src_data0 = (10, 9, 15)
expected_result = (20, 20, 20)
src0 = gr.vector_source_f(src_data0)
cam_ref = Comparator(2, 20, 4)
dst = gr.vector_sink_f()
self.tb.connect(src0, cam_ref)
self.tb.connect(cam_ref, dst)
self.tb.run()
result_data = dst.data()
print "Result data is : ", result_data
self.assertFloatTuplesAlmostEqual(expected_result, result_data, 6)
def __init__(self, algorithm, stop_event, options):
self.stopEvent = stop_event
self.numLines = options.numLines
self.width = options.width
self.items = Orderable(self.numLines)
self.cmp = Comparator(self.items)
self.markers = Markers()
algorithm.initialize(self.cmp, self.items, self.markers)
self.gen = algorithm.sort()
pygame.init()
self.window = pygame.display.set_mode(
(self.width, 6 * (self.numLines + 1)))
self.i = 0
self.update()
from Mesh import Mesh
from Shape import Circle
from Comparator import Comparator
import matplotlib.pyplot as plt
base = Mesh( '/home/tristan/box/adcirc/runs/scaled20-noutgs/200' )
comp = Mesh( '/home/tristan/box/adcirc/runs/scaled20-noutgs/3200' )
circle = Circle( -77.9199990000, 33.8721240000, 0.05 )
comparator = Comparator( base, comp, circle )
comparator.compare_meshes()
rmse = comparator.compare_elevation_timeseries()
# with open( '/home/tristan/box/adcirc/runs/scaled20-noutgs/rmse.txt', 'w' ) as f:
#
# for ( x, y ), e in rmse.items():
#
# f.write( str( x ) + ',' + str( y ) + ',' + str( e ) + '\n' )
xvals = []
yvals = []
evals = []
for ( x, y ), e in rmse.items():
xvals.append( x )
yvals.append( y )
evals.append( e )
# print( x, y, e )
def test_record_size_mismatch(self):
c = Comparator("blah", 1)
self.assertRaises(Exception, c.compute_error, [1, 2, 3, 4],
[1, 2, 3, 4, 5])
self.assertRaises(Exception, c.compute_error, [1, 2, 3, 4, 5],
[1, 2, 3, 4])
def btnStartPars(file1, file2):
dict = FileWorkClass.ReadFile(file1)
d = sorted(dict.items(),
key=cmp_to_key(Comparator.make_comparator(Comparator.cmpValue)),
reverse=False)
FileWorkClass.WriteFile(file2, d)
def test_compute_error(self):
c = Comparator([[]], 1)
err = c.compute_error([1, 2, 3, 4], [1, 2, 3, 4])
print("ERROR: {0}".format(err))
self.assertTrue(err == 0.0)
def test_get_best_match(self):
fu = FileUtils(filename="test_file.csv", skip_header=True)
reference_rows = fu.get_arrays_from_csv()
comp = Comparator(reference_rows, 1)
match = comp.get_closes_match([1, 10.0, 20.0, 30.0])
self.assertTrue(match[0] == 3.0)
from Generator import Generator if __name__ == '__main__': s1 = Searcher(CONSTS.O_DIR1) s2 = Searcher(CONSTS.D_DIR1) orig_files = s1.search() dev_files = s2.search() for f1 in orig_files: f2 = [item for item in dev_files if item['filename'] == f1['filename']] if len(f2) <= 0: continue f2 = f2[0] c = Comparator( "%s/%s" % (f1['dir'], f1['filename']), "%s/%s" % (f2['dir'], f2['filename']) ) c.compare() modified = c.get_modified_method() if len(modified) <= 0: continue #print f1['filename'] #for methodinfo in modified: # print "\t%s" % methodinfo g = Generator(f1['filename'], modified) g.generate() #c.dump_method_content() #c.pick_same_method_name()"""
""" Main: Archivo que muestra el uso basico de la clase Comparator """
# Se utiliza el modulo py_midicsv para extraer las notas desde un archivo MIDI.
import py_midicsv as pm
# Sin embargo, lo unico necesario para utilizar esta clase es tener un lista de notas con la notacion en numero de las notas musicales.
from Comparator import Comparator
# Se cambia el formato del archivo de MIDI a CSV
OnRepeat = pm.midi_to_csv(r"dummy.mid")
# Extraccion de Notas de Archivo MIDI
notes = []
for l in OnRepeat:
line = l.split(",")
if len(line) >= 5:
if line[2] == " Note_on_c":
m = int(line[4])
notes.append(m)
# Se inicializa el objeto de la clase Comparator con los intervalos de la Escala Mayor
majorComp = Comparator([0, 2, 4, 5, 7, 9, 11])
notesStr = ["C", "C#", "D", "D#", "E", "F", "F#", "G", "G#", "A", "A#", "B"]
indiceMayor = majorComp.analyze(notes)
print("Indices Escala Mayor", indiceMayor)
print("\nEscala:", notesStr[indiceMayor.index(max(indiceMayor))], "mayor\n")
def test_compute_with_different_start_col(self):
c = Comparator([[]], 2)
err = c.compute_error([1, 2, 3, 4], [50, 60, 3, 4])
print("ERROR: {0}".format(err))
self.assertTrue(err == 0.0)