def test_history():
global pts
db = DataBase()
psmotif = "AAGSGGAAGQAASAAAGAGKGLAA"
db.AddSeq(psmotif)
for i in pts: db.AddSeq(i)
db.SMFromFile("blosum62.mat")
db.DBupgma()
#db.SearchDomains(1) #slow but works
db.ExportHistory()
db2 = DataBase()
db2.ImportHistory()
print(db2.domains)
def test_DBmultiAlign():
db = DataBase()
for i in pts: db.AddSeq(i)
db.SMFromFile("blosum62.mat")
db.DBupgma()
print(db.DBmultiAlign([1,2]))
def test_DBupgma():
db = DataBase()
db.LoadFile("testfasta.txt", filetype="fasta")
db.SMFromFile("blosum62.mat")
db.DBupgma()
db.tree.printtree()
