def test_get_field_words(self):
dataset = Dataset('GDS987').populate()
words = Word2Geo.get_field_words(dataset)
expected = {
"description": [
u'analysis', u'of', u'kidneys', u'from', u'adult', u'renal',
u'transplant', u'recipients', u'subjected', u'to',
u'calcineurin', u'inhibitor-free', u'immunosuppression',
u'using', u'sirolimus', u'patients', u'treated', u'with',
u'sirolimus', u'have', u'a', u'lower', u'prevalence', u'of',
u'chronic', u'allograft', u'nephropathy', u'compared', u'to',
u'those', u'treated', u'with', u'cyclosporine', u'a',
u'calcineurin', u'inhibitor'
],
"title": [
'kidney', u'transplant', u'response', u'to', u'calcineurin',
u'inhibitor-free', u'immunosuppression', u'using', u'sirolimus'
],
"summary": []
}
# warn("words[title](%d)=%s" % (len(words['title']), words['title']))
for tag, n_words in {
"description": 105,
"title": 9 + 8 + 7,
"summary": 0
}.items():
self.assertEqual(len(words[tag]),
n_words,
msg="%s: got: %d, expected: %d" %
(tag, len(words[tag]), n_words))
def test_get_field_words(self):
geo_id='GSE10072'
geo=Factory().newGEO(geo_id)
words=Word2Geo.get_field_words(geo)
self.assertEqual(len(words['title']), 42)
self.assertEqual(len(words['description']), 0)
self.assertEqual(len(words['summary']), 738) # not quite sure why this isn't 741
def test_get_field_words(self):
geo_id = "GSE10072"
geo = Factory().newGEO(geo_id)
words = Word2Geo.get_field_words(geo)
self.assertEqual(len(words["title"]), 42)
self.assertEqual(len(words["description"]), 0)
self.assertEqual(len(words["summary"]), 738) # not quite sure why this isn't 741
def test_get_field_words(self):
dataset=Dataset('GDS987').populate()
words=Word2Geo.get_field_words(dataset)
expected={"description" : [u'analysis', u'of', u'kidneys', u'from', u'adult', u'renal', u'transplant', u'recipients', u'subjected', u'to', u'calcineurin', u'inhibitor-free', u'immunosuppression', u'using', u'sirolimus', u'patients', u'treated', u'with', u'sirolimus', u'have', u'a', u'lower', u'prevalence', u'of', u'chronic', u'allograft', u'nephropathy', u'compared', u'to', u'those', u'treated', u'with', u'cyclosporine', u'a', u'calcineurin', u'inhibitor'],
"title" : ['kidney', u'transplant', u'response', u'to', u'calcineurin', u'inhibitor-free', u'immunosuppression', u'using', u'sirolimus'],
"summary" : []}
# warn("words[title](%d)=%s" % (len(words['title']), words['title']))
for tag, n_words in {"description": 105, "title": 9+8+7, "summary": 0}.items():
self.assertEqual(len(words[tag]), n_words, msg="%s: got: %d, expected: %d" % (tag, len(words[tag]), n_words))
