def test_d_RunningExecutables(self): from Ganga.GPI import Job, File, Executable # -- RUNNINGEXECUTABLES EXAMPLE START # Already existing Exe j = Job() j.application = Executable() j.application.exe = '/bin/ls' j.application.args = ['-l', '-h'] j.submit() # Wait for completion j.peek("stdout") # Send a script open('my_script.sh', 'w').write("""#!/bin/bash echo 'Current dir: ' `pwd` echo 'Contents:' ls -ltr echo 'Args: ' $@ """) import os os.system('chmod +x my_script.sh') j = Job() j.application = Executable() j.application.exe = File('my_script.sh') j.submit() # Wait for completion j.peek("stdout")
def test_f_InputAndOutputData(self): from Ganga.GPI import Job, File, LocalFile, GangaDataset, Local, plugins # -- INPUTANDOUTPUTDATA BASIC START # create a script to send open('my_script2.sh', 'w').write("""#!/bin/bash ls -ltr more "my_input.txt" echo "TESTING" > my_output.txt """) import os os.system('chmod +x my_script2.sh') # create a script to send open('my_input.txt', 'w').write('Input Testing works!') j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [ LocalFile('my_input.txt') ] j.outputfiles = [ LocalFile('my_output.txt') ] j.submit() # -- INPUTANDOUTPUTDATA BASIC STOP # -- INPUTANDOUTPUTDATA PEEKOUTPUT START j.peek() # list output dir contents j.peek('my_output.txt') # -- INPUTANDOUTPUTDATA PEEKOUTPUT STOP # -- INPUTANDOUTPUTDATA FAILJOB START # This job will fail j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [ LocalFile('my_input.txt') ] j.outputfiles = [ LocalFile('my_output_FAIL.txt') ] j.submit() # -- INPUTANDOUTPUTDATA FAILJOB STOP # -- INPUTANDOUTPUTDATA WILDCARD START # This job will pick up both 'my_input.txt' and 'my_output.txt' j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [LocalFile('my_input.txt')] j.outputfiles = [LocalFile('*.txt')] j.submit() # -- INPUTANDOUTPUTDATA WILDCARD STOP # -- INPUTANDOUTPUTDATA OUTPUTFILES START j.outputfiles # -- INPUTANDOUTPUTDATA OUTPUTFILES STOP # -- INPUTANDOUTPUTDATA INPUTDATA START # Create a test script open('my_script3.sh', 'w').write("""#!/bin/bash echo $PATH ls -ltr more __GangaInputData.txt__ echo "MY TEST FILE" > output_file.txt """) import os os.system('chmod +x my_script3.sh') # Submit a job j = Job() j.application.exe = File('my_script3.sh') j.inputdata = GangaDataset(files=[LocalFile('*.sh')]) j.backend = Local() j.submit() # -- INPUTANDOUTPUTDATA INPUTDATA STOP # -- INPUTANDOUTPUTDATA GANGAFILES START plugins('gangafiles')
def test_f_InputAndOutputData(self): from Ganga.GPI import Job, File, LocalFile, GangaDataset, Local, plugins # -- INPUTANDOUTPUTDATA BASIC START # create a script to send open('my_script2.sh', 'w').write("""#!/bin/bash ls -ltr more "my_input.txt" echo "TESTING" > my_output.txt """) import os os.system('chmod +x my_script2.sh') # create a script to send open('my_input.txt', 'w').write('Input Testing works!') j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [LocalFile('my_input.txt')] j.outputfiles = [LocalFile('my_output.txt')] j.submit() # -- INPUTANDOUTPUTDATA BASIC STOP # -- INPUTANDOUTPUTDATA PEEKOUTPUT START j.peek() # list output dir contents j.peek('my_output.txt') # -- INPUTANDOUTPUTDATA PEEKOUTPUT STOP # -- INPUTANDOUTPUTDATA FAILJOB START # This job will fail j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [LocalFile('my_input.txt')] j.outputfiles = [LocalFile('my_output_FAIL.txt')] j.submit() # -- INPUTANDOUTPUTDATA FAILJOB STOP # -- INPUTANDOUTPUTDATA WILDCARD START # This job will pick up both 'my_input.txt' and 'my_output.txt' j = Job() j.application.exe = File('my_script2.sh') j.inputfiles = [LocalFile('my_input.txt')] j.outputfiles = [LocalFile('*.txt')] j.submit() # -- INPUTANDOUTPUTDATA WILDCARD STOP # -- INPUTANDOUTPUTDATA OUTPUTFILES START j.outputfiles # -- INPUTANDOUTPUTDATA OUTPUTFILES STOP # -- INPUTANDOUTPUTDATA INPUTDATA START # Create a test script open('my_script3.sh', 'w').write("""#!/bin/bash echo $PATH ls -ltr more __GangaInputData.txt__ echo "MY TEST FILE" > output_file.txt """) import os os.system('chmod +x my_script3.sh') # Submit a job j = Job() j.application.exe = File('my_script3.sh') j.inputdata = GangaDataset(files=[LocalFile('*.sh')]) j.backend = Local() j.submit() # -- INPUTANDOUTPUTDATA INPUTDATA STOP # -- INPUTANDOUTPUTDATA GANGAFILES START plugins('gangafiles')