def test_d_RunningExecutables(self):
from Ganga.GPI import Job, File, Executable
# -- RUNNINGEXECUTABLES EXAMPLE START
# Already existing Exe
j = Job()
j.application = Executable()
j.application.exe = '/bin/ls'
j.application.args = ['-l', '-h']
j.submit()
# Wait for completion
j.peek("stdout")
# Send a script
open('my_script.sh', 'w').write("""#!/bin/bash
echo 'Current dir: ' `pwd`
echo 'Contents:'
ls -ltr
echo 'Args: ' $@
""")
import os
os.system('chmod +x my_script.sh')
j = Job()
j.application = Executable()
j.application.exe = File('my_script.sh')
j.submit()
# Wait for completion
j.peek("stdout")
def test_d_RunningExecutables(self):
from Ganga.GPI import Job, File, Executable
# -- RUNNINGEXECUTABLES EXAMPLE START
# Already existing Exe
j = Job()
j.application = Executable()
j.application.exe = '/bin/ls'
j.application.args = ['-l', '-h']
j.submit()
# Wait for completion
j.peek("stdout")
# Send a script
open('my_script.sh', 'w').write("""#!/bin/bash
echo 'Current dir: ' `pwd`
echo 'Contents:'
ls -ltr
echo 'Args: ' $@
""")
import os
os.system('chmod +x my_script.sh')
j = Job()
j.application = Executable()
j.application.exe = File('my_script.sh')
j.submit()
# Wait for completion
j.peek("stdout")
def test_f_InputAndOutputData(self):
from Ganga.GPI import Job, File, LocalFile, GangaDataset, Local, plugins
# -- INPUTANDOUTPUTDATA BASIC START
# create a script to send
open('my_script2.sh', 'w').write("""#!/bin/bash
ls -ltr
more "my_input.txt"
echo "TESTING" > my_output.txt
""")
import os
os.system('chmod +x my_script2.sh')
# create a script to send
open('my_input.txt', 'w').write('Input Testing works!')
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [ LocalFile('my_input.txt') ]
j.outputfiles = [ LocalFile('my_output.txt') ]
j.submit()
# -- INPUTANDOUTPUTDATA BASIC STOP
# -- INPUTANDOUTPUTDATA PEEKOUTPUT START
j.peek() # list output dir contents
j.peek('my_output.txt')
# -- INPUTANDOUTPUTDATA PEEKOUTPUT STOP
# -- INPUTANDOUTPUTDATA FAILJOB START
# This job will fail
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [ LocalFile('my_input.txt') ]
j.outputfiles = [ LocalFile('my_output_FAIL.txt') ]
j.submit()
# -- INPUTANDOUTPUTDATA FAILJOB STOP
# -- INPUTANDOUTPUTDATA WILDCARD START
# This job will pick up both 'my_input.txt' and 'my_output.txt'
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [LocalFile('my_input.txt')]
j.outputfiles = [LocalFile('*.txt')]
j.submit()
# -- INPUTANDOUTPUTDATA WILDCARD STOP
# -- INPUTANDOUTPUTDATA OUTPUTFILES START
j.outputfiles
# -- INPUTANDOUTPUTDATA OUTPUTFILES STOP
# -- INPUTANDOUTPUTDATA INPUTDATA START
# Create a test script
open('my_script3.sh', 'w').write("""#!/bin/bash
echo $PATH
ls -ltr
more __GangaInputData.txt__
echo "MY TEST FILE" > output_file.txt
""")
import os
os.system('chmod +x my_script3.sh')
# Submit a job
j = Job()
j.application.exe = File('my_script3.sh')
j.inputdata = GangaDataset(files=[LocalFile('*.sh')])
j.backend = Local()
j.submit()
# -- INPUTANDOUTPUTDATA INPUTDATA STOP
# -- INPUTANDOUTPUTDATA GANGAFILES START
plugins('gangafiles')
def test_f_InputAndOutputData(self):
from Ganga.GPI import Job, File, LocalFile, GangaDataset, Local, plugins
# -- INPUTANDOUTPUTDATA BASIC START
# create a script to send
open('my_script2.sh', 'w').write("""#!/bin/bash
ls -ltr
more "my_input.txt"
echo "TESTING" > my_output.txt
""")
import os
os.system('chmod +x my_script2.sh')
# create a script to send
open('my_input.txt', 'w').write('Input Testing works!')
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [LocalFile('my_input.txt')]
j.outputfiles = [LocalFile('my_output.txt')]
j.submit()
# -- INPUTANDOUTPUTDATA BASIC STOP
# -- INPUTANDOUTPUTDATA PEEKOUTPUT START
j.peek() # list output dir contents
j.peek('my_output.txt')
# -- INPUTANDOUTPUTDATA PEEKOUTPUT STOP
# -- INPUTANDOUTPUTDATA FAILJOB START
# This job will fail
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [LocalFile('my_input.txt')]
j.outputfiles = [LocalFile('my_output_FAIL.txt')]
j.submit()
# -- INPUTANDOUTPUTDATA FAILJOB STOP
# -- INPUTANDOUTPUTDATA WILDCARD START
# This job will pick up both 'my_input.txt' and 'my_output.txt'
j = Job()
j.application.exe = File('my_script2.sh')
j.inputfiles = [LocalFile('my_input.txt')]
j.outputfiles = [LocalFile('*.txt')]
j.submit()
# -- INPUTANDOUTPUTDATA WILDCARD STOP
# -- INPUTANDOUTPUTDATA OUTPUTFILES START
j.outputfiles
# -- INPUTANDOUTPUTDATA OUTPUTFILES STOP
# -- INPUTANDOUTPUTDATA INPUTDATA START
# Create a test script
open('my_script3.sh', 'w').write("""#!/bin/bash
echo $PATH
ls -ltr
more __GangaInputData.txt__
echo "MY TEST FILE" > output_file.txt
""")
import os
os.system('chmod +x my_script3.sh')
# Submit a job
j = Job()
j.application.exe = File('my_script3.sh')
j.inputdata = GangaDataset(files=[LocalFile('*.sh')])
j.backend = Local()
j.submit()
# -- INPUTANDOUTPUTDATA INPUTDATA STOP
# -- INPUTANDOUTPUTDATA GANGAFILES START
plugins('gangafiles')
