def testExtraDataSet(self): file = open('/home/giannis/Downloads/pair_end.txt') data =list(file) file.close() d= int(data[1]) lines = [d.strip() for d in data[2:-2]] out = data[-1].strip() string = pairedReads(lines, d) assert string == out
def testPairs(self): d = 2 lines = ["GAGA|TTGA", "TCGT|GATG", "CGTG|ATGT", "TGGT|TGAG", "GTGA|TGTT", "GTGG|GTGA", "TGAG|GTTG", "GGTC|GAGA", "GTCG|AGAT"] string = pairedReads(lines,d) assert string == "GTGGTCGTGAGATGTTGA" pass