def testExtraDataSet(self):
file = open('/home/giannis/Downloads/pair_end.txt')
data =list(file)
file.close()
d= int(data[1])
lines = [d.strip() for d in data[2:-2]]
out = data[-1].strip()
string = pairedReads(lines, d)
assert string == out
def testPairs(self):
d = 2
lines = ["GAGA|TTGA",
"TCGT|GATG",
"CGTG|ATGT",
"TGGT|TGAG",
"GTGA|TGTT",
"GTGG|GTGA",
"TGAG|GTTG",
"GGTC|GAGA",
"GTCG|AGAT"]
string = pairedReads(lines,d)
assert string == "GTGGTCGTGAGATGTTGA"
pass
