def ProgressBar(n_steps, label="", allow_cancel=False, parent=None):
"""
Progressbar context manager for showing progress of workflow to user. Example::
with emzed.gui.ProgressBar(n_steps=100, allow_cancel=True) as handler:
for i in range(100):
# we simulate work of step i
# we update progressbar
handler.update(i, "step %03d" % i)
# we can check if user pressed "Cancel" button and stop our "workflow":
if handler.is_canceled():
break
"""
app = guidata.qapplication()
dlg = QProgressDialog(parent)
dlg.setLabelText(label)
dlg.setAutoClose(False)
dlg.setAutoReset(False)
if allow_cancel:
dlg.setCancelButtonText("Cancel")
dlg.setMaximum(n_steps)
class ProgressBarHandler(object):
def __init__(self, n_steps, dlg):
self._dlg = dlg
self._n_steps = n_steps
self._n = 0
self._canceled = False
dlg.canceled.connect(self._set_canceled)
dlg.setValue(0)
def _set_canceled(self):
self._canceled = True
dlg.close()
def update(self, n, message=None):
app.processEvents()
self._n = n
dlg.setValue(n + 1)
if message is not None:
dlg.setLabelText(message)
dlg.update()
app.processEvents()
def is_canceled(self):
return self._canceled
dlg.activateWindow()
dlg.show()
dlg.raise_()
app.processEvents()
handler = ProgressBarHandler(n_steps, dlg)
yield handler
dlg.close()
def setup_workspace(self):
umdimage = os.path.join(self.iso_dir, UMDIMAGE_DAT)
umdimage2 = os.path.join(self.iso_dir, UMDIMAGE2_DAT)
voice = os.path.join(self.iso_dir, VOICE_PAK)
self.generate_directories()
progress = QProgressDialog("", QtCore.QString(), 0, 11000, self)
progress.setWindowTitle("Setting up workspace...")
progress.setWindowModality(Qt.Qt.WindowModal)
progress.setMinimumDuration(0)
progress.setValue(0)
progress.setAutoClose(False)
progress.setAutoReset(False)
progress.setLabelText("Creating directories...")
# Do the easy stuff first.
if not os.path.isdir(self.changes_dir):
os.makedirs(self.changes_dir)
progress.setValue(progress.value() + 1)
if not os.path.isdir(self.backup_dir):
os.makedirs(self.backup_dir)
progress.setValue(progress.value() + 1)
if not os.path.isdir(self.editor_data_dir):
os.makedirs(self.editor_data_dir)
progress.setValue(progress.value() + 1)
thread_fns = [
{"target": extract_umdimage, "kwargs": {"filename": umdimage, "out_dir": self.umdimage_dir, "eboot": self.eboot_path, "umdimage": UMDIMAGES.umdimage}},
{"target": extract_umdimage, "kwargs": {"filename": umdimage2, "out_dir": self.umdimage2_dir, "eboot": self.eboot_path, "umdimage": UMDIMAGES.umdimage2}},
{"target": extract_pak, "kwargs": {"filename": voice, "out_dir": self.voice_dir}},
]
# Going to capture stdout because I don't feel like
# rewriting the extract functions to play nice with GUI.
stdout = sys.stdout
sys.stdout = cStringIO.StringIO()
for thread_fn in thread_fns:
thread = threading.Thread(**thread_fn)
thread.start()
while thread.isAlive():
thread.join(THREAD_TIMEOUT)
output = [line for line in sys.stdout.getvalue().split('\n') if len(line) > 0]
progress.setValue(progress.value() + len(output))
if len(output) > 0:
progress.setLabelText("Extracting %s..." % output[-1])
sys.stdout = cStringIO.StringIO()
sys.stdout = stdout
# Give us an ISO directory for the editor to place modified files in.
progress.setLabelText("Copying ISO files...")
# ISO directory needs to not exist for copytree.
if os.path.isdir(self.edited_iso_dir):
shutil.rmtree(self.edited_iso_dir)
# One more thing we want threaded so it doesn't lock up the GUI.
thread = threading.Thread(target = shutil.copytree, kwargs = {"src": self.iso_dir, "dst": self.edited_iso_dir})
thread.start()
while thread.isAlive():
thread.join(THREAD_TIMEOUT)
progress.setLabelText("Copying ISO files...")
# It has to increase by some amount or it won't update and the UI will lock up.
progress.setValue(progress.value() + 1)
# shutil.copytree(self.iso_dir, self.edited_iso_dir)
progress.setValue(progress.value() + 1)
# Files we want to make blank, because they're unnecessary.
blank_files = [
os.path.join(self.edited_iso_dir, "PSP_GAME", "INSDIR", "UMDIMAGE.DAT"),
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "DATA.BIN"),
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "EBOOT.BIN"),
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "PARAM.SFO"),
]
for blank in blank_files:
with open(blank, "wb") as f:
pass
# Copy the decrypted EBOOT into the ISO folder and apply our hacks to it.
progress.setLabelText("Hacking EBOOT...")
progress.setValue(progress.value() + 1)
hacked_eboot = BitStream(filename = self.eboot_path)
hacked_eboot, offset = apply_eboot_patches(hacked_eboot)
with open(os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "EBOOT.BIN"), "wb") as f:
hacked_eboot.tofile(f)
# shutil.copy(self.eboot_path, os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "EBOOT.BIN"))
progress.setLabelText("Extracting editor data...")
progress.setValue(progress.value() + 1)
# Extract the editor data.
editor_data = zipfile.ZipFile("data/editor_data.zip", "r")
editor_data.extractall(self.editor_data_dir)
editor_data.close()
progress.setValue(progress.maximum())
progress.close()
self.ui.grpStep4.setEnabled(False)
self.ui.grpStep5.setEnabled(True)
class specread:
def __init__(self, specfile, startLineNum=0, beamline='APS-15IDC',det='CCD',data={},par={}):
self.Data=data
self.Par=par
self.specfile=specfile
if beamline=='APS-15IDC':
self.APS_15IDC(startLineNum=startLineNum,det=det)
if beamline=='APS-9IDC':
self.APS_9IDC(startLineNum=startLineNum,det=det)
def updateProgress(self):
self.progressDialog.setValue(self.progressDialog.value()+1)
def APS_15IDC(self,startLineNum=0, det='CCD'):
"""
Function to read a complete spec File collected at APS 15IDC
"""
self.progressDialog=QProgressDialog('Reading scans form SPEC File:','Abort',0,100)
self.progressDialog.setWindowModality(Qt.WindowModal)
self.progressDialog.setWindowTitle('Wait')
self.progressDialog.setAutoClose(True)
self.progressDialog.setAutoReset(True)
self.progressDialog.setMinimum(1)
self.Data['YCol']='Apex2'
self.Data['NCol']='Monc'
fid=open(self.specfile)
fdata=fid.readlines()
self.SpecFileFull=fdata
fid.close()
if fdata[0][:2]!='#F':
self.Data['NumOfScans']=0
self.Data['Message']='The file is not a valid specfile!!'
print 'Error:: The file is not a valid specfile!!'
else:
startScanLineNums=[i for i in range(startLineNum,len(fdata)) if fdata[i][:2]=='#S']
self.progressDialog.setMaximum(len(startScanLineNums))
self.progressDialog.show()
self.endLineNum=startScanLineNums[-1]
if startLineNum>0:
startScanLineNums=sorted(startScanLineNums)
numOfScans=len(startScanLineNums)
scanLines=[fdata[i] for i in startScanLineNums]
if startLineNum==0:
tmp=0
self.Data['NumOfScans']=0#numOfScans
self.Data['ScanLines']=[]#scanLines
self.Data['StartScanLineNums']=[]#startScanLineNums
else:
tmp=self.Data['NumOfScans']-1
self.Data['NumOfScans']=self.Data['NumOfScans']-1#+numOfScans
self.Data['ScanLines']=self.Data['ScanLines'][:-1]#+scanLines[1:]
self.Data['StartScanLineNums']=self.Data['StartScanLineNums'][:-1]#+startScanLineNums
for i in range(numOfScans):
start=startScanLineNums[i]+1
line=fdata[start]
i=i+tmp
self.Data[i]={}
self.Par[i]={}
if fdata[start-1].split()[2]=='getandsave_mca' or fdata[start-1].split()[2]=='MCAscanpt':
self.Par[i]['Mca']=1
self.Data[i]['ScanVar']='Empty'
else:
self.Par[i]['Mca']=0
tmpdata=[]
self.Par[i]['CCD']=0
while line[:2]!='\n' and line[:2]!='#C':
if line[:2]=='#P':
parName=line[3:].split()
start=start+1
parValue=map(eval,fdata[start][1:].split())
for j in range(len(parName)):
self.Par[i][parName[j]]=parValue[j]
if line[:2]=='#W':
tmppar=line[2:].split()
self.Par[i]['Wavelength']=eval(tmppar[1])
if line[:3]=='#G0':
self.Par[i]['g_l1']=float(line[4:].split()[5])
self.Par[i]['g_l2']=float(line[4:].split()[6])
self.Par[i]['g_l3']=float(line[4:].split()[7])
if line[:2]=='#A':
tmppar=line[2:].split()
self.Par[i]['Absorber']=eval(tmppar[1])
if line[:2]=='#Q':
tmppar=line[2:].split()
self.Par[i]['Q']=map(eval, tmppar)
if line[:3]=='#B0':
tmppar=line[3:].split()
self.Par[i]['CCD']=1
if line[:3]=='#B2':
tmppar=map(eval, line[3:].split())
self.Par[i]['DBPos']=tmppar[:2]
self.Par[i]['S2D_Dist']=tmppar[2]
self.Par[i]['S7D_Dist']=tmppar[3]
if line[:2]=='#L':
scanVar=line[3:-1].split()
self.Data[i]['ScanVar']=scanVar
if line[0]!='#':
tmpdata.append(map(eval, line.split( )))
start=start+1
try:
line=fdata[start]
except:
break
for j in range(len(scanVar)):
try:
self.Data[i][scanVar[j]]=np.array(tmpdata)[:,j]
except:
self.Data[i][scanVar[j]]=None
if len(self.Par[i])==1:
self.Par[i]['Message']='No parameters!!'
self.progressDialog.setLabelText('Reading scans form SPEC File: '+str(i+1))
self.updateProgress()
self.Data['NumOfScans']=i
self.Data['ScanLines']=self.Data['ScanLines']+[scanLines[i-tmp]]
self.Data['StartScanLineNums']=self.Data['StartScanLineNums']+[startScanLineNums[i-tmp]]
self.endLineNum=startScanLineNums[i-tmp]
if self.progressDialog.wasCanceled()==True:
break
self.progressDialog.hide()
def APS_9IDC(self,startLineNum=0, det='CCD'):
"""
Function to read a complete spec File collected at APS 15IDC
"""
self.progressDialog=QProgressDialog('Reading scans form SPEC File:','Abort',0,100)
self.progressDialog.setWindowModality(Qt.WindowModal)
self.progressDialog.setWindowTitle('Wait')
self.progressDialog.setAutoClose(True)
self.progressDialog.setAutoReset(True)
self.progressDialog.setMinimum(1)
self.Data['YCol']='Bicron1'
self.Data['NCol']='i2'
fid=open(self.specfile)
fdata=fid.readlines()
self.SpecFileFull=fdata
fid.close()
if fdata[0][:2]!='#F':
self.Data['NumOfScans']=0
self.Data['Message']='The file is not a valid specfile!!'
print 'Error:: The file is not a valid specfile!!'
else:
startScanLineNums=[i for i in range(startLineNum, len(fdata)) if fdata[i][:2]=='#S']
self.progressDialog.setMaximum(len(startScanLineNums))
self.progressDialog.show()
self.endLineNum=startScanLineNums[-1]
if startLineNum>0:
startScanLineNums=sorted(startScanLineNums)
self.Data['StartScanLineNums']=startScanLineNums
numOfScans=len(self.Data['StartScanLineNums'])
scanLines=[fdata[i] for i in startScanLineNums]
if startLineNum==0:
tmp=0
self.Data['NumOfScans']=0#numOfScans
self.Data['ScanLines']=[]#scanLines
self.Data['StartScanLineNums']=[]#startScanLineNums
self.Par['ParName']=[]
for i in range(startScanLineNums[0]):
line=fdata[i].split()
if fdata[i][:2]=='#O':
self.Par['ParName']=self.Par['ParName']+line[1:]
else:
tmp=self.Data['NumOfScans']
self.Data['NumOfScans']=self.Data['NumOfScans']-1#+numOfScans
self.Data['ScanLines']=self.Data['ScanLines'][:-1]#+scanLines[1:]
self.Data['StartScanLineNums']=self.Data['StartScanLineNums'][:-1]#+startScanLineNums
for i in range(numOfScans):
start=startScanLineNums[i]+1
line=fdata[start]
i=i+tmp
self.Data[i]={}
self.Par[i]={}
if fdata[start-1].split()[2]=='getandsave_mca' or fdata[start-1].split()[2]=='MCAscanpt':
self.Par[i]['Mca']=1
self.Data[i]['ScanVar']='Empty'
else:
self.Par[i]['Mca']=0
self.Par[i]['CCD']=0
tmpdata=[]
pstart=0
while line[:2]!='\n' and line[:2]!='#C':
if line[:2]=='#P':
parValue=map(eval,fdata[start].split()[1:])
for j in range(len(parValue)):
self.Par[i][self.Par['ParName'][pstart]]=parValue[j]
pstart=pstart+1
if line[:2]=='#Q':
tmppar=line[2:].split()
self.Par[i]['Q']=map(eval, tmppar)
if line[:2]=='#L':
scanVar=line[3:-1].split()
self.Data[i]['ScanVar']=scanVar
if line[0]!='#':
tmpdata.append(map(eval, line.split( )))
start=start+1
line=fdata[start]
for j in range(len(scanVar)):
try:
self.Data[i][scanVar[j]]=np.array(tmpdata)[:,j]
except:
self.Data[i][scanVar[j]]=None
if len(self.Par[i])==1:
self.Par[i]['Message']='No parameters!!'
self.progressDialog.setLabelText('Reading scans form SPEC File: '+str(i+1))
self.updateProgress()
self.Data['NumOfScans']=i
self.Data['ScanLines']=self.Data['ScanLines']+[scanLines[i-tmp]]
self.Data['StartScanLineNums']=self.Data['StartScanLineNums']+[startScanLineNums[i-tmp]]
self.endLineNum=startScanLineNums[i-tmp]
if self.progressDialog.wasCanceled()==True:
break
self.progressDialog.hide()
def setup_workspace(self):
data0 = os.path.join(self.iso_dir, DATA0_CPK)
self.generate_directories()
progress = QProgressDialog("", QtCore.QString(), 0, 11000, self)
progress.setWindowTitle("Setting up workspace...")
progress.setWindowModality(Qt.Qt.WindowModal)
progress.setMinimumDuration(0)
progress.setValue(0)
progress.setAutoClose(False)
progress.setAutoReset(False)
progress.setLabelText("Creating directories...")
# Do the easy stuff first.
if not os.path.isdir(self.changes_dir):
os.makedirs(self.changes_dir)
progress.setValue(progress.value() + 1)
if not os.path.isdir(self.backup_dir):
os.makedirs(self.backup_dir)
progress.setValue(progress.value() + 1)
thread_fns = [{"target": extract_cpk, "kwargs": {"filename": data0, "out_dir": self.data0_dir}}]
# Going to capture stdout because I don't feel like
# rewriting the extract functions to play nice with GUI.
stdout = sys.stdout
sys.stdout = cStringIO.StringIO()
for thread_fn in thread_fns:
thread = threading.Thread(**thread_fn)
thread.start()
while thread.isAlive():
thread.join(THREAD_TIMEOUT)
output = [line for line in sys.stdout.getvalue().split("\n") if len(line) > 0]
progress.setValue(progress.value() + len(output))
if len(output) > 0:
progress.setLabelText("Extracting %s..." % output[-1])
sys.stdout = cStringIO.StringIO()
sys.stdout = stdout
# Give us an ISO directory for the editor to place modified files in.
progress.setLabelText("Copying ISO files...")
# ISO directory needs to not exist for copytree.
if os.path.isdir(self.edited_iso_dir):
shutil.rmtree(self.edited_iso_dir)
# One more thing we want threaded so it doesn't lock up the GUI.
thread = threading.Thread(target=shutil.copytree, kwargs={"src": self.iso_dir, "dst": self.edited_iso_dir})
thread.start()
while thread.isAlive():
thread.join(THREAD_TIMEOUT)
progress.setLabelText("Copying ISO files...")
# It has to increase by some amount or it won't update and the UI will lock up.
progress.setValue(progress.value() + 1)
# shutil.copytree(self.iso_dir, self.edited_iso_dir)
progress.setValue(progress.value() + 1)
# Files we want to make blank, because they're unnecessary.
blank_files = [
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "DATA.BIN"),
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "EBOOT.BIN"),
os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "UPDATE", "PARAM.SFO"),
]
for blank in blank_files:
with open(blank, "wb") as f:
pass
# Copy the decrypted EBOOT into the ISO folder and apply our hacks to it.
progress.setLabelText("Hacking EBOOT...")
progress.setValue(progress.value() + 1)
hacked_eboot = BitStream(filename=self.eboot_path)
hacked_eboot = apply_eboot_patches(hacked_eboot)
with open(os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "EBOOT.BIN"), "wb") as f:
hacked_eboot.tofile(f)
# shutil.copy(self.eboot_path, os.path.join(self.edited_iso_dir, "PSP_GAME", "SYSDIR", "EBOOT.BIN"))
progress.setLabelText("Extracting editor data...")
progress.setValue(progress.value() + 1)
# Extract the editor data.
editor_data = zipfile.ZipFile("data/editor_data.zip", "r")
editor_data.extractall(self.editor_data_dir)
editor_data.close()
progress.setValue(progress.maximum())
progress.close()
self.ui.grpStep4.setEnabled(False)
self.ui.grpStep5.setEnabled(True)
class specread:
def __init__(self,
specfile,
startLineNum=0,
endScanNum=0,
beamline='APS-15IDC',
det='CCD',
data={},
par={}):
self.Data = data
self.Par = par
self.specfile = specfile
if beamline == 'APS-15IDC':
self.APS_15IDC(startLineNum=startLineNum,
endScanNum=endScanNum,
det=det)
if beamline == 'APS-9IDC':
self.APS_9IDC(startLineNum=startLineNum,
endScanNum=endScanNum,
det=det)
def updateProgress(self):
self.progressDialog.setValue(self.progressDialog.value() + 1)
def APS_15IDC(self, startLineNum=0, endScanNum=0, det='CCD'):
"""
Function to read a complete spec File collected at APS 15IDC
"""
self.progressDialog = QProgressDialog('Reading scans form SPEC File:',
'Abort', 0, 100)
self.progressDialog.setWindowModality(Qt.WindowModal)
self.progressDialog.setWindowTitle('Wait')
self.progressDialog.setAutoClose(True)
self.progressDialog.setAutoReset(True)
self.progressDialog.setMinimum(1)
self.Data['YCol'] = 'Apex2'
self.Data['NCol'] = 'Monc'
fid = open(self.specfile)
fdata = fid.readlines()
self.SpecFileFull = fdata
fid.close()
if fdata[0][:2] != '#F':
self.Data['NumOfScans'] = 0
self.Data['Message'] = 'The file is not a valid specfile!!'
print 'Error:: The file is not a valid specfile!!'
else:
startScanLineNums = [
i for i in range(startLineNum, len(fdata))
if fdata[i][:2] == '#S'
]
self.progressDialog.setMaximum(len(startScanLineNums))
self.progressDialog.show()
if startLineNum > 0:
startScanLineNums = sorted(startScanLineNums)
numOfScans = len(startScanLineNums)
scanLines = [fdata[i] for i in startScanLineNums]
if startLineNum == 0:
tmp = 0
self.Data['NumOfScans'] = 0 #numOfScans
self.Data['ScanNums'] = []
offset = 0
# self.Data['ScanLines']=[]#scanLines
# self.Data['StartScanLineNums']=[]#startScanLineNums
else:
tmp = self.Data['NumOfScans']
self.Data[
'NumOfScans'] = self.Data['NumOfScans'] - 1 #+numOfScans
offset = 1
# self.Data['ScanLines']=self.Data['ScanLines'][:-1]#+scanLines[1:]
# self.Data['StartScanLineNums']=self.Data['StartScanLineNums'][:-1]#+startScanLineNums
if int(scanLines[-1].split()
[1]) != len(startScanLineNums) + endScanNum - offset:
print len(
startScanLineNums), scanLines[-1].split()[1], endScanNum
self.Data['Error'] = True
self.Data['Message'] = 'There are identical scans in the file'
else:
self.Data['Error'] = False
for i in range(numOfScans):
start = startScanLineNums[i] + 1
line = fdata[start]
num = int(fdata[startScanLineNums[i]].split()[1])
i = i + tmp
self.Data[num] = {}
self.Par[num] = {}
if fdata[start - 1].split()[2] == 'getandsave_mca':
self.Par[num]['Detector'] = 'Vortex'
self.Data[num]['ScanVar'] = 'Empty'
else:
self.Par[num]['Detector'] = 'Monitor'
tmpdata = []
while line[:2] != '\n' and line[:2] != '#C':
if line[:2] == '#P':
parName = line[4:].split()
start = start + 1
parValue = map(eval, fdata[start][1:].split())
for j in range(len(parName)):
self.Par[num][parName[j]] = parValue[j]
if line[:2] == '#W':
tmppar = line[2:].split()
self.Par[num]['Wavelength'] = eval(tmppar[1])
if line[:3] == '#G0':
self.Par[num]['g_l1'] = float(line[4:].split()[5])
self.Par[num]['g_l2'] = float(line[4:].split()[6])
self.Par[num]['g_l3'] = float(line[4:].split()[7])
if line[:2] == '#A':
tmppar = line[2:].split()
self.Par[num]['Absorber'] = eval(tmppar[1])
if line[:2] == '#Q':
tmppar = line[2:].split()
self.Par[num]['Q'] = map(eval, tmppar)
if line[:2] == '#V':
self.Par[num]['Detector'] = 'Vortex'
if line[:3] == '#B0':
tmppar = line[3:].split('.')
self.Par[num]['ImageNumber'] = len(
line[3:].split('_')[-1].split('.')[0])
if tmppar[1] == 'tif\n':
self.Par[num]['Detector'] = 'Pilatus'
elif tmppar[1] == 'sfrm\n':
self.Par[num]['Detector'] = 'Bruker'
if line[:3] == '#B1':
try:
tmppar = map(eval, line[3:].split())
except:
tmppar = map(eval, line[3:].split()[:-1])
self.Par[num]['DBPos'] = tmppar[:2]
self.Par[num]['S2D_Dist'] = tmppar[2]
self.Par[num]['S7D_Dist'] = tmppar[3]
if line[:3] == '#B2':
tmppar = map(eval, line[3:].split())
self.Par[num]['DBPos'] = tmppar[:2]
self.Par[num]['S2D_Dist'] = tmppar[2]
self.Par[num]['S7D_Dist'] = tmppar[3]
if line[:2] == '#L':
scanVar = line[3:-1].split()
self.Data[num]['ScanVar'] = scanVar
if line[0] != '#':
try:
tmpdata.append(map(eval, line.split()))
except:
self.Data[num][
'Message'] = 'Something wrong with Scan Number %d', num, '.Please check the the scan in the specfile.'
print 'Something wrong with Scan Number %d', num
start = start + 1
try:
line = fdata[start]
except:
break
if self.Data[num]['ScanVar'] != 'Empty':
for j in range(len(scanVar)):
try:
self.Data[num][scanVar[j]] = np.array(
tmpdata, dtype='float')[:, j]
except:
self.Data[num][scanVar[j]] = None
if len(self.Par[num]) == 1:
self.Par[num]['Message'] = 'No parameters!!'
self.progressDialog.setLabelText('Reading Scan #' + str(num))
self.updateProgress()
self.Data['NumOfScans'] = num
# self.Data['ScanLines']=self.Data['ScanLines']+[scanLines[num-tmp]]
self.Data[num]['ScanLine'] = fdata[startScanLineNums[i - tmp]]
self.Data[num]['StartScanLineNum'] = startScanLineNums[i - tmp]
self.endLineNum = startScanLineNums[i - tmp]
self.Data['ScanNums'].append(num)
if self.progressDialog.wasCanceled() == True:
break
self.progressDialog.hide()
def APS_9IDC(self, startLineNum=0, endScanNum=0, det='CCD'):
"""
Function to read a complete spec File collected at APS 9IDC
"""
self.progressDialog = QProgressDialog('Reading scans form SPEC File:',
'Abort', 0, 100)
self.progressDialog.setWindowModality(Qt.WindowModal)
self.progressDialog.setWindowTitle('Wait')
self.progressDialog.setAutoClose(True)
self.progressDialog.setAutoReset(True)
self.progressDialog.setMinimum(1)
self.Data['YCol'] = 'Bicron1'
self.Data['NCol'] = 'i2'
fid = open(self.specfile)
fdata = fid.readlines()
self.SpecFileFull = fdata
fid.close()
if fdata[0][:2] != '#F':
self.Data['NumOfScans'] = 0
self.Data['Message'] = 'The file is not a valid specfile!!'
print 'Error:: The file is not a valid specfile!!'
else:
startScanLineNums = [
i for i in range(startLineNum, len(fdata))
if fdata[i][:2] == '#S'
]
self.progressDialog.setMaximum(len(startScanLineNums))
self.progressDialog.show()
self.endLineNum = startScanLineNums[-1]
if startLineNum > 0:
startScanLineNums = sorted(startScanLineNums)
self.Data['StartScanLineNums'] = startScanLineNums
numOfScans = len(self.Data['StartScanLineNums'])
scanLines = [fdata[i] for i in startScanLineNums]
if startLineNum == 0:
tmp = 0
self.Data['NumOfScans'] = 0 #numOfScans
self.Data['ScanLines'] = [] #scanLines
self.Data['StartScanLineNums'] = [] #startScanLineNums
self.Par['ParName'] = []
for i in range(startScanLineNums[0]):
line = fdata[i].split()
if fdata[i][:2] == '#O':
self.Par['ParName'] = self.Par['ParName'] + line[1:]
else:
tmp = self.Data['NumOfScans']
self.Data[
'NumOfScans'] = self.Data['NumOfScans'] - 1 #+numOfScans
self.Data['ScanLines'] = self.Data[
'ScanLines'][:-1] #+scanLines[1:]
self.Data['StartScanLineNums'] = self.Data[
'StartScanLineNums'][:-1] #+startScanLineNums
for i in range(numOfScans):
start = startScanLineNums[i] + 1
line = fdata[start]
i = i + tmp
self.Data[i] = {}
self.Par[i] = {}
if fdata[start - 1].split()[2] == 'getandsave_mca' or fdata[
start - 1].split()[2] == 'MCAscanpt':
self.Par[i]['Mca'] = 1
self.Data[i]['ScanVar'] = 'Empty'
else:
self.Par[i]['Mca'] = 0
self.Par[i]['CCD'] = 0
tmpdata = []
pstart = 0
while line[:2] != '\n' and line[:2] != '#C':
if line[:2] == '#P':
parValue = map(eval, fdata[start].split()[1:])
for j in range(len(parValue)):
self.Par[i][self.Par['ParName']
[pstart]] = parValue[j]
pstart = pstart + 1
if line[:2] == '#Q':
tmppar = line[2:].split()
self.Par[i]['Q'] = map(eval, tmppar)
if line[:2] == '#L':
scanVar = line[3:-1].split()
self.Data[i]['ScanVar'] = scanVar
if line[0] != '#':
tmpdata.append(map(eval, line.split()))
start = start + 1
line = fdata[start]
for j in range(len(scanVar)):
try:
self.Data[i][scanVar[j]] = np.array(tmpdata)[:, j]
except:
self.Data[i][scanVar[j]] = None
if len(self.Par[i]) == 1:
self.Par[i]['Message'] = 'No parameters!!'
self.progressDialog.setLabelText(
'Reading scans form SPEC File: ' + str(i + 1))
self.updateProgress()
self.Data['NumOfScans'] = i
self.Data['ScanLines'] = self.Data['ScanLines'] + [
scanLines[i - tmp]
]
self.Data['StartScanLineNums'] = self.Data[
'StartScanLineNums'] + [startScanLineNums[i - tmp]]
self.endLineNum = startScanLineNums[i - tmp]
if self.progressDialog.wasCanceled() == True:
break
self.progressDialog.hide()
def ProgressBar(n_steps, label="", allow_cancel=False, parent=None):
"""
Progressbar context manager for showing progress of workflow to user. Example::
with emzed.gui.ProgressBar(n_steps=100, allow_cancel=True) as handler:
for i in range(100):
# we simulate work of step i
# we update progressbar
handler.update(i, "step %03d" % i)
# we can check if user pressed "Cancel" button and stop our "workflow":
if handler.is_canceled():
break
"""
app = guidata.qapplication()
dlg = QProgressDialog(parent)
dlg.setLabelText(label)
dlg.setAutoClose(False)
dlg.setAutoReset(False)
if allow_cancel:
dlg.setCancelButtonText("Cancel")
dlg.setMaximum(n_steps)
class ProgressBarHandler(object):
def __init__(self, n_steps, dlg):
self._dlg = dlg
self._n_steps = n_steps
self._n = 0
self._canceled = False
dlg.canceled.connect(self._set_canceled)
dlg.setValue(0)
def _set_canceled(self):
self._canceled = True
dlg.close()
def update(self, n, message=None):
app.processEvents()
self._n = n
dlg.setValue(n + 1)
if message is not None:
dlg.setLabelText(message)
dlg.update()
app.processEvents()
def is_canceled(self):
return self._canceled
dlg.activateWindow()
dlg.show()
dlg.raise_()
app.processEvents()
handler = ProgressBarHandler(n_steps, dlg)
yield handler
dlg.close()