def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'hklfile': obj_ = XSDataFile() obj_.build(child_) self.setHklfile(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'outputFilePath': obj_ = XSDataFile() obj_.build(child_) self.setOutputFilePath(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'outputMatrix': obj_ = XSDataArray() obj_.build(child_) self.setOutputMatrix(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'fileNameParameters': obj_ = XSDataGridScreeningFileNameParameters() obj_.build(child_) self.setFileNameParameters(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'imageQualityIndicators': obj_ = XSDataImageQualityIndicators() obj_.build(child_) self.setImageQualityIndicators(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'mosaicity': obj_ = XSDataDouble() obj_.build(child_) self.setMosaicity(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'rankingResolution': obj_ = XSDataDouble() obj_.build(child_) self.setRankingResolution(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'comment': obj_ = XSDataString() obj_.build(child_) self.setComment(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'imageQualityIndicatorsId': obj_ = XSDataInteger() obj_.build(child_) self.setImageQualityIndicatorsId(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'spot': obj_ = XSDataXDSSpot() obj_.build(child_) self.spot.append(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def __init__(self, status=None, spot=None):
XSDataResult.__init__(self, status)
if spot is None:
self.__spot = []
else:
checkType("XSDataResultXDSSpotSearch", "Constructor of XSDataResultXDSSpotSearch", spot, "XSDataXDSSpot")
self.__spot = spot
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'beta': obj_ = XSDataDouble() obj_.build(child_) self.setBeta(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'gama': obj_ = XSDataDouble() obj_.build(child_) self.setGama(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'dose_half_th': obj_ = XSDataDouble() obj_.build(child_) self.setDose_half_th(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'dose_half': obj_ = XSDataDouble() obj_.build(child_) self.setDose_half(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'relative_radiation_sensitivity': obj_ = XSDataDouble() obj_.build(child_) self.setRelative_radiation_sensitivity(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'query': obj_ = XSDataQuery() obj_.build(child_) self.query.append(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def __init__(self, status=None, fileGraph=None):
XSDataResult.__init__(self, status)
if fileGraph is None:
self.__fileGraph = []
else:
checkType("XSDataResultPlotGle", "Constructor of XSDataResultPlotGle", fileGraph, "list")
self.__fileGraph = fileGraph
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'fileGraph': obj_ = XSDataFile() obj_.build(child_) self.fileGraph.append(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def exportChildren(self, outfile, level, name_='XSDataResultXia2DIALS'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._logFile is not None:
self.logFile.export(outfile, level, name_='logFile')
else:
warnEmptyAttribute("logFile", "XSDataFile")
if self._htmlFile is not None:
self.htmlFile.export(outfile, level, name_='htmlFile')
else:
warnEmptyAttribute("htmlFile", "XSDataFile")
for dataFiles_ in self.getDataFiles():
dataFiles_.export(outfile, level, name_='dataFiles')
if self.getDataFiles() == []:
warnEmptyAttribute("dataFiles", "XSDataFile")
if self._ispybXML is not None:
self.ispybXML.export(outfile, level, name_='ispybXML')
else:
warnEmptyAttribute("ispybXML", "XSDataFile")
if self._summary is not None:
self.summary.export(outfile, level, name_='summary')
else:
warnEmptyAttribute("summary", "XSDataFile")
for logFiles_ in self.getLogFiles():
logFiles_.export(outfile, level, name_='logFiles')
if self.getLogFiles() == []:
warnEmptyAttribute("logFiles", "XSDataFile")
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'energyCalibration':
obj_ = XSDataEnergyCalibration()
obj_.build(child_)
self.setEnergyCalibration(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'imageBackground':
obj_ = XSDataControlImageBackground3D()
obj_.build(child_)
self.imageBackground.append(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'xds_hkl':
obj_ = XSDataString()
obj_.build(child_)
self.setXds_hkl(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'logFile':
obj_ = XSDataFile()
obj_.build(child_)
self.setLogFile(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'htmlFile':
obj_ = XSDataFile()
obj_.build(child_)
self.setHtmlFile(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'dataFiles':
obj_ = XSDataFile()
obj_.build(child_)
self.dataFiles.append(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'ispybXML':
obj_ = XSDataFile()
obj_.build(child_)
self.setIspybXML(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'summary':
obj_ = XSDataFile()
obj_.build(child_)
self.setSummary(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'logFiles':
obj_ = XSDataFile()
obj_.build(child_)
self.logFiles.append(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'imageDozor':
obj_ = XSDataImageDozor()
obj_.build(child_)
self.imageDozor.append(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def exportChildren(self, outfile, level, name_='XSDataResultXDSAPP'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._logFile is not None:
self.logFile.export(outfile, level, name_='logFile')
if self._pointlessLog is not None:
self.pointlessLog.export(outfile, level, name_='pointlessLog')
if self._phenixXtriageLog is not None:
self.phenixXtriageLog.export(outfile, level, name_='phenixXtriageLog')
if self._correctLP is not None:
self.correctLP.export(outfile, level, name_='correctLP')
if self._XDS_ASCII_HKL is not None:
self.XDS_ASCII_HKL.export(outfile, level, name_='XDS_ASCII_HKL')
if self._XDS_ASCII_HKL_1 is not None:
self.XDS_ASCII_HKL_1.export(outfile, level, name_='XDS_ASCII_HKL_1')
if self._XSCALE_LP is not None:
self.XSCALE_LP.export(outfile, level, name_='XSCALE_LP')
if self._XDS_INP is not None:
self.XDS_INP.export(outfile, level, name_='XDS_INP')
for mtz_F_ in self.getMtz_F():
mtz_F_.export(outfile, level, name_='mtz_F')
for mtz_I_ in self.getMtz_I():
mtz_I_.export(outfile, level, name_='mtz_I')
for mtz_F_plus_F_minus_ in self.getMtz_F_plus_F_minus():
mtz_F_plus_F_minus_.export(outfile, level, name_='mtz_F_plus_F_minus')
for hkl_ in self.getHkl():
hkl_.export(outfile, level, name_='hkl')
for cv_ in self.getCv():
cv_.export(outfile, level, name_='cv')
def __init__(self, status=None, query=None):
XSDataResult.__init__(self, status)
if query is None:
self.__query = []
else:
checkType("XSDataResultAccumulator", "Constructor of XSDataResultAccumulator", query, "list")
self.__query = query
def __init__(self, status=None, dataArray=None, energy=None):
XSDataResult.__init__(self, status)
checkType("XSDataResultReadDataID24", "Constructor of XSDataResultReadDataID24", energy, "XSDataArray")
self._energy = energy
checkType("XSDataResultReadDataID24", "Constructor of XSDataResultReadDataID24", dataArray, "XSDataArray")
self._dataArray = dataArray
def __init__(self, status=None, timedOut=None, actualSize=None, actualFile=None):
XSDataResult.__init__(self, status)
checkType("XSDataResultWaitFile", "Constructor of XSDataResultWaitFile", actualFile, "XSDataFile")
self.__actualFile = actualFile
checkType("XSDataResultWaitFile", "Constructor of XSDataResultWaitFile", actualSize, "XSDataInteger")
self.__actualSize = actualSize
checkType("XSDataResultWaitFile", "Constructor of XSDataResultWaitFile", timedOut, "XSDataBoolean")
self.__timedOut = timedOut
def __init__(self, status=None, imageQualityIndicatorsId=None, comment=None, rankingResolution=None, mosaicity=None, imageQualityIndicators=None, fileNameParameters=None): XSDataResult.__init__(self, status) self.__fileNameParameters = fileNameParameters self.__imageQualityIndicators = imageQualityIndicators self.__mosaicity = mosaicity self.__rankingResolution = rankingResolution self.__comment = comment self.__imageQualityIndicatorsId = imageQualityIndicatorsId
def __init__(self, status=None, htmlPage=None, bFactorPlot=None, scaleIntensityPlot=None, relative_radiation_sensitivity=None, dose_half=None, dose_half_th=None, gama=None, beta=None):
XSDataResult.__init__(self, status)
if beta is None:
self._beta = None
elif beta.__class__.__name__ == "XSDataDouble":
self._beta = beta
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'beta' is not XSDataDouble but %s" % self._beta.__class__.__name__
raise BaseException(strMessage)
if gama is None:
self._gama = None
elif gama.__class__.__name__ == "XSDataDouble":
self._gama = gama
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'gama' is not XSDataDouble but %s" % self._gama.__class__.__name__
raise BaseException(strMessage)
if dose_half_th is None:
self._dose_half_th = None
elif dose_half_th.__class__.__name__ == "XSDataDouble":
self._dose_half_th = dose_half_th
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'dose_half_th' is not XSDataDouble but %s" % self._dose_half_th.__class__.__name__
raise BaseException(strMessage)
if dose_half is None:
self._dose_half = None
elif dose_half.__class__.__name__ == "XSDataDouble":
self._dose_half = dose_half
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'dose_half' is not XSDataDouble but %s" % self._dose_half.__class__.__name__
raise BaseException(strMessage)
if relative_radiation_sensitivity is None:
self._relative_radiation_sensitivity = None
elif relative_radiation_sensitivity.__class__.__name__ == "XSDataDouble":
self._relative_radiation_sensitivity = relative_radiation_sensitivity
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'relative_radiation_sensitivity' is not XSDataDouble but %s" % self._relative_radiation_sensitivity.__class__.__name__
raise BaseException(strMessage)
if scaleIntensityPlot is None:
self._scaleIntensityPlot = None
elif scaleIntensityPlot.__class__.__name__ == "XSDataFile":
self._scaleIntensityPlot = scaleIntensityPlot
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'scaleIntensityPlot' is not XSDataFile but %s" % self._scaleIntensityPlot.__class__.__name__
raise BaseException(strMessage)
if bFactorPlot is None:
self._bFactorPlot = None
elif bFactorPlot.__class__.__name__ == "XSDataFile":
self._bFactorPlot = bFactorPlot
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'bFactorPlot' is not XSDataFile but %s" % self._bFactorPlot.__class__.__name__
raise BaseException(strMessage)
if htmlPage is None:
self._htmlPage = None
elif htmlPage.__class__.__name__ == "XSDataFile":
self._htmlPage = htmlPage
else:
strMessage = "ERROR! XSDataResultRdfit constructor argument 'htmlPage' is not XSDataFile but %s" % self._htmlPage.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, energyCalibration=None):
XSDataResult.__init__(self, status)
if energyCalibration is None:
self._energyCalibration = None
elif energyCalibration.__class__.__name__ == "XSDataEnergyCalibration":
self._energyCalibration = energyCalibration
else:
strMessage = "ERROR! XSDataResultCalibrateEnergy constructor argument 'energyCalibration' is not XSDataEnergyCalibration but %s" % self._energyCalibration.__class__.__name__
raise BaseException(strMessage)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'edge':
obj_ = XSDataDouble()
obj_.build(child_)
self.setEdge(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'slope':
obj_ = XSDataDouble()
obj_.build(child_)
self.setSlope(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'jump':
obj_ = XSDataDouble()
obj_.build(child_)
self.setJump(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'hwl':
obj_ = XSDataDouble()
obj_.build(child_)
self.setHwl(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'ewl':
obj_ = XSDataDouble()
obj_.build(child_)
self.setEwl(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort92':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort92(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort95':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort95(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort96':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort96(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort97':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort97(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort98':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort98(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'fort99':
obj_ = XSDataArray()
obj_.build(child_)
self.setFort99(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def __init__(self, status=None, xds_hkl=None):
XSDataResult.__init__(self, status)
if xds_hkl is None:
self._xds_hkl = None
elif xds_hkl.__class__.__name__ == "XSDataString":
self._xds_hkl = xds_hkl
else:
strMessage = "ERROR! XSDataOutputXdsBurnStrategy constructor argument 'xds_hkl' is not XSDataString but %s" % self._xds_hkl.__class__.__name__
raise BaseException(strMessage)
def exportChildren(self,
outfile,
level,
name_='XSDataResultPyarchThumbnailGeneratorParallel'):
XSDataResult.exportChildren(self, outfile, level, name_)
for pathToJPEGImage_ in self.getPathToJPEGImage():
pathToJPEGImage_.export(outfile, level, name_='pathToJPEGImage')
for pathToThumbImage_ in self.getPathToThumbImage():
pathToThumbImage_.export(outfile, level, name_='pathToThumbImage')
def __init__(self, status=None, energyCalibration=None):
XSDataResult.__init__(self, status)
if energyCalibration is None:
self._energyCalibration = None
elif energyCalibration.__class__.__name__ == "XSDataEnergyCalibration":
self._energyCalibration = energyCalibration
else:
strMessage = "ERROR! XSDataResultCalibrateEnergy constructor argument 'energyCalibration' is not XSDataEnergyCalibration but %s" % self._energyCalibration.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, imageDozor=None):
XSDataResult.__init__(self, status)
if imageDozor is None:
self._imageDozor = []
elif imageDozor.__class__.__name__ == "list":
self._imageDozor = imageDozor
else:
strMessage = "ERROR! XSDataResultDozor constructor argument 'imageDozor' is not list but %s" % self._imageDozor.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, pdfFile=None):
XSDataResult.__init__(self, status)
if pdfFile is None:
self._pdfFile = None
elif pdfFile.__class__.__name__ == "XSDataFile":
self._pdfFile = pdfFile
else:
strMessage = "ERROR! XSDataResultHTML2PDF constructor argument 'pdfFile' is not XSDataFile but %s" % self._pdfFile.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, imageBackground=None):
XSDataResult.__init__(self, status)
if imageBackground is None:
self._imageBackground = []
elif imageBackground.__class__.__name__ == "list":
self._imageBackground = imageBackground
else:
strMessage = "ERROR! XSDataResultControlBackground3D constructor argument 'imageBackground' is not list but %s" % self._imageBackground.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, thumbnail=None):
XSDataResult.__init__(self, status)
if thumbnail is None:
self._thumbnail = None
elif thumbnail.__class__.__name__ == "XSDataFile":
self._thumbnail = thumbnail
else:
strMessage = "ERROR! XSDataResultMXThumbnail constructor argument 'thumbnail' is not XSDataFile but %s" % self._thumbnail.__class__.__name__
raise BaseException(strMessage)
def exportChildren(self, outfile, level, name_='XSDataRaddoseOutput'): XSDataResult.exportChildren(self, outfile, level, name_) if self.__absorbedDose is not None: self.absorbedDose.export(outfile, level, name_='absorbedDose') if self.__absorbedDoseRate is not None: self.absorbedDoseRate.export(outfile, level, name_='absorbedDoseRate') if self.__pathToLogFile is not None: self.pathToLogFile.export(outfile, level, name_='pathToLogFile') if self.__timeToReachHendersonLimit is not None: self.timeToReachHendersonLimit.export(outfile, level, name_='timeToReachHendersonLimit')
def __init__(self, status=None, timeToReachHendersonLimit=None, pathToLogFile=None, absorbedDoseRate=None, absorbedDose=None):
XSDataResult.__init__(self, status)
checkType("XSDataRaddoseOutput", "Constructor of XSDataRaddoseOutput", absorbedDose, "XSDataDouble")
self.__absorbedDose = absorbedDose
checkType("XSDataRaddoseOutput", "Constructor of XSDataRaddoseOutput", absorbedDoseRate, "XSDataAbsorbedDoseRate")
self.__absorbedDoseRate = absorbedDoseRate
checkType("XSDataRaddoseOutput", "Constructor of XSDataRaddoseOutput", pathToLogFile, "XSDataFile")
self.__pathToLogFile = pathToLogFile
checkType("XSDataRaddoseOutput", "Constructor of XSDataRaddoseOutput", timeToReachHendersonLimit, "XSDataTime")
self.__timeToReachHendersonLimit = timeToReachHendersonLimit
def exportChildren(self, outfile, level, name_='XSDataResultLabelit'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self.__labelitMosflmScriptsOutput is not None:
self.labelitMosflmScriptsOutput.export(outfile, level, name_='labelitMosflmScriptsOutput')
else:
warnEmptyAttribute("labelitMosflmScriptsOutput", "XSDataLabelitMosflmScriptsOutput")
if self.__labelitScreenOutput is not None:
self.labelitScreenOutput.export(outfile, level, name_='labelitScreenOutput')
else:
warnEmptyAttribute("labelitScreenOutput", "XSDataLabelitScreenOutput")
def exportChildren(self, outfile, level, name_='XSDataResultWaitMultiFile'):
XSDataResult.exportChildren(self, outfile, level, name_)
for actualFile_ in self.getActualFile():
actualFile_.export(outfile, level, name_='actualFile')
if self.__actualMinSize is not None:
self.actualMinSize.export(outfile, level, name_='actualMinSize')
if self.__timedOut is not None:
self.timedOut.export(outfile, level, name_='timedOut')
else:
warnEmptyAttribute("timedOut", "XSDataBoolean")
def exportChildren(self, outfile, level, name_='XSDataResultWaitFile'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self.__actualFile is not None:
self.actualFile.export(outfile, level, name_='actualFile')
if self.__actualSize is not None:
self.actualSize.export(outfile, level, name_='actualSize')
if self.__timedOut is not None:
self.timedOut.export(outfile, level, name_='timedOut')
else:
warnEmptyAttribute("timedOut", "XSDataBoolean")
def exportChildren(self, outfile, level, name_='XSDataResultMXWaitFile'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._timedOut is not None:
self.timedOut.export(outfile, level, name_='timedOut')
else:
warnEmptyAttribute("timedOut", "XSDataBoolean")
if self._finalSize is not None:
self.finalSize.export(outfile, level, name_='finalSize')
else:
warnEmptyAttribute("finalSize", "XSDataInteger")
def exportChildren(self,
outfile,
level,
name_='XSDataResultCalibrateEnergy'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._energyCalibration is not None:
self.energyCalibration.export(outfile,
level,
name_='energyCalibration')
else:
warnEmptyAttribute("energyCalibration", "XSDataEnergyCalibration")
def postProcess(self):
self.DEBUG('Truncate: postProcess')
EDPluginExecProcessScript.postProcess(self)
output_file = self.dataInput.output_file.value
res = XSDataResult()
status = XSDataStatus()
status.isSuccess = XSDataBoolean(os.path.exists(output_file))
res.status = status
self.dataOutput = res
def exportChildren(self,
outfile,
level,
name_='XSDataResultMatrixInvertFile'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self.__outputMatrixFile is not None:
self.outputMatrixFile.export(outfile,
level,
name_='outputMatrixFile')
else:
warnEmptyAttribute("outputMatrixFile", "XSDataFile")
def __init__(self, status=None, dataArray=None, energy=None):
XSDataResult.__init__(self, status)
checkType("XSDataResultReadDataID24",
"Constructor of XSDataResultReadDataID24", energy,
"XSDataArray")
self._energy = energy
checkType("XSDataResultReadDataID24",
"Constructor of XSDataResultReadDataID24", dataArray,
"XSDataArray")
self._dataArray = dataArray
def postProcess(self):
self.DEBUG('FileConversion: postProcess')
EDPluginControl.postProcess(self)
output_file = self.dataInput.output_file.value
res = XSDataResult()
status = XSDataStatus()
status.isSuccess = XSDataBoolean(
os.path.exists(self.uniqueify.dataInput.output_file.value))
res.status = status
self.dataOutput = res
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'outputCBFFile':
obj_ = XSDataFile()
obj_.build(child_)
self.setOutputCBFFile(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'outputCBFFileTemplate':
obj_ = XSDataFile()
obj_.build(child_)
self.setOutputCBFFileTemplate(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'pathToHTMLFile':
obj_ = XSDataFile()
obj_.build(child_)
self.setPathToHTMLFile(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'pathToHTMLDirectory':
obj_ = XSDataFile()
obj_.build(child_)
self.setPathToHTMLDirectory(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'labelitMosflmScriptsOutput': obj_ = XSDataLabelitMosflmScriptsOutput() obj_.build(child_) self.setLabelitMosflmScriptsOutput(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'labelitScreenOutput': obj_ = XSDataLabelitScreenOutput() obj_.build(child_) self.setLabelitScreenOutput(obj_) XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'timedOut':
obj_ = XSDataBoolean()
obj_.build(child_)
self.setTimedOut(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'finalSize':
obj_ = XSDataInteger()
obj_.build(child_)
self.setFinalSize(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'logFile':
obj_ = XSDataFile()
obj_.build(child_)
self.setLogFile(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'solution':
obj_ = XSDataXOalignSolution()
obj_.build(child_)
self.solution.append(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'energy':
obj_ = XSDataArray()
obj_.build(child_)
self.setEnergy(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'dataArray':
obj_ = XSDataArray()
obj_.build(child_)
self.setDataArray(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'pathToJPEGImage':
obj_ = XSDataFile()
obj_.build(child_)
self.pathToJPEGImage.append(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'pathToThumbImage':
obj_ = XSDataFile()
obj_.build(child_)
self.pathToThumbImage.append(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'exposureTimePerImage':
obj_ = XSDataDouble()
obj_.build(child_)
self.setExposureTimePerImage(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'transmission':
obj_ = XSDataDouble()
obj_.build(child_)
self.setTransmission(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'numberOfImages':
obj_ = XSDataDouble()
obj_.build(child_)
self.setNumberOfImages(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'rotationWidth':
obj_ = XSDataDouble()
obj_.build(child_)
self.setRotationWidth(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'resolution':
obj_ = XSDataDouble()
obj_.build(child_)
self.setResolution(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'totalDose':
obj_ = XSDataDouble()
obj_.build(child_)
self.setTotalDose(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'totalExposureTime':
obj_ = XSDataDouble()
obj_.build(child_)
self.setTotalExposureTime(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'doseRate':
obj_ = XSDataDouble()
obj_.build(child_)
self.setDoseRate(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'sensitivity':
obj_ = XSDataDouble()
obj_.build(child_)
self.setSensitivity(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'minExposure':
obj_ = XSDataDouble()
obj_.build(child_)
self.setMinExposure(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def __init__(self,
status=None,
pathToHTMLDirectory=None,
pathToHTMLFile=None):
XSDataResult.__init__(self, status)
checkType("XSDataResultSimpleHTMLPage",
"Constructor of XSDataResultSimpleHTMLPage", pathToHTMLFile,
"XSDataFile")
self.__pathToHTMLFile = pathToHTMLFile
checkType("XSDataResultSimpleHTMLPage",
"Constructor of XSDataResultSimpleHTMLPage",
pathToHTMLDirectory, "XSDataFile")
self.__pathToHTMLDirectory = pathToHTMLDirectory
def exportChildren(self,
outfile,
level,
name_='XSDataResultPyarchThumbnailGenerator'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._pathToJPEGImage is not None:
self.pathToJPEGImage.export(outfile,
level,
name_='pathToJPEGImage')
if self._pathToThumbImage is not None:
self.pathToThumbImage.export(outfile,
level,
name_='pathToThumbImage')
def __init__(self,
status=None,
logFiles=None,
summary=None,
ispybXML=None,
dataFiles=None,
htmlFile=None,
logFile=None):
XSDataResult.__init__(self, status)
if logFile is None:
self._logFile = None
elif logFile.__class__.__name__ == "XSDataFile":
self._logFile = logFile
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'logFile' is not XSDataFile but %s" % self._logFile.__class__.__name__
raise BaseException(strMessage)
if htmlFile is None:
self._htmlFile = None
elif htmlFile.__class__.__name__ == "XSDataFile":
self._htmlFile = htmlFile
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'htmlFile' is not XSDataFile but %s" % self._htmlFile.__class__.__name__
raise BaseException(strMessage)
if dataFiles is None:
self._dataFiles = []
elif dataFiles.__class__.__name__ == "list":
self._dataFiles = dataFiles
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'dataFiles' is not list but %s" % self._dataFiles.__class__.__name__
raise BaseException(strMessage)
if ispybXML is None:
self._ispybXML = None
elif ispybXML.__class__.__name__ == "XSDataFile":
self._ispybXML = ispybXML
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'ispybXML' is not XSDataFile but %s" % self._ispybXML.__class__.__name__
raise BaseException(strMessage)
if summary is None:
self._summary = None
elif summary.__class__.__name__ == "XSDataFile":
self._summary = summary
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'summary' is not XSDataFile but %s" % self._summary.__class__.__name__
raise BaseException(strMessage)
if logFiles is None:
self._logFiles = []
elif logFiles.__class__.__name__ == "list":
self._logFiles = logFiles
else:
strMessage = "ERROR! XSDataResultXia2DIALS constructor argument 'logFiles' is not list but %s" % self._logFiles.__class__.__name__
raise BaseException(strMessage)
def exportChildren(self, outfile, level, name_='XSDataResultCrystFEL'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._overallCompl is not None:
self.overallCompl.export(outfile, level, name_='overallCompl')
else:
warnEmptyAttribute("overallCompl", "XSDataDouble")
if self._overallRed is not None:
self.overallRed.export(outfile, level, name_='overallRed')
else:
warnEmptyAttribute("overallRed", "XSDataDouble")
if self._overallSnr is not None:
self.overallSnr.export(outfile, level, name_='overallSnr')
else:
warnEmptyAttribute("overallSnr", "XSDataDouble")
if self._overallRsplit is not None:
self.overallRsplit.export(outfile, level, name_='overallRsplit')
else:
warnEmptyAttribute("overallRsplit", "XSDataDouble")
if self._overallCC is not None:
self.overallCC.export(outfile, level, name_='overallCC')
else:
warnEmptyAttribute("overallCC", "XSDataDouble")
if self._resolutionLimitLow is not None:
self.resolutionLimitLow.export(outfile,
level,
name_='resolutionLimitLow')
else:
warnEmptyAttribute("resolutionLimitLow", "XSDataDouble")
if self._resolutionLimitHigh is not None:
self.resolutionLimitHigh.export(outfile,
level,
name_='resolutionLimitHigh')
else:
warnEmptyAttribute("resolutionLimitHigh", "XSDataDouble")
if self._comment is not None:
self.comment.export(outfile, level, name_='comment')
else:
warnEmptyAttribute("comment", "XSDataString")
for dataFiles_ in self.getDataFiles():
dataFiles_.export(outfile, level, name_='dataFiles')
if self.getDataFiles() == []:
warnEmptyAttribute("dataFiles", "XSDataFile")
if self._summaryFile is not None:
self.summaryFile.export(outfile, level, name_='summaryFile')
else:
warnEmptyAttribute("summaryFile", "XSDataFile")
for logFiles_ in self.getLogFiles():
logFiles_.export(outfile, level, name_='logFiles')
if self.getLogFiles() == []:
warnEmptyAttribute("logFiles", "XSDataFile")
def exportChildren(self,
outfile,
level,
name_='XSDataResultSimpleHTMLPage'):
XSDataResult.exportChildren(self, outfile, level, name_)
if self._pathToHTMLFile is not None:
self.pathToHTMLFile.export(outfile, level, name_='pathToHTMLFile')
else:
warnEmptyAttribute("pathToHTMLFile", "XSDataFile")
if self._pathToHTMLDirectory is not None:
self.pathToHTMLDirectory.export(outfile,
level,
name_='pathToHTMLDirectory')
else:
warnEmptyAttribute("pathToHTMLDirectory", "XSDataFile")
def __init__(self, status=None, finalSize=None, timedOut=None):
XSDataResult.__init__(self, status)
if timedOut is None:
self._timedOut = None
elif timedOut.__class__.__name__ == "XSDataBoolean":
self._timedOut = timedOut
else:
strMessage = "ERROR! XSDataResultMXWaitFile constructor argument 'timedOut' is not XSDataBoolean but %s" % self._timedOut.__class__.__name__
raise BaseException(strMessage)
if finalSize is None:
self._finalSize = None
elif finalSize.__class__.__name__ == "XSDataInteger":
self._finalSize = finalSize
else:
strMessage = "ERROR! XSDataResultMXWaitFile constructor argument 'finalSize' is not XSDataInteger but %s" % self._finalSize.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, solution=None, logFile=None):
XSDataResult.__init__(self, status)
if logFile is None:
self._logFile = None
elif logFile.__class__.__name__ == "XSDataFile":
self._logFile = logFile
else:
strMessage = "ERROR! XSDataResultXOalign constructor argument 'logFile' is not XSDataFile but %s" % self._logFile.__class__.__name__
raise BaseException(strMessage)
if solution is None:
self._solution = []
elif solution.__class__.__name__ == "list":
self._solution = solution
else:
strMessage = "ERROR! XSDataResultXOalign constructor argument 'solution' is not list but %s" % self._solution.__class__.__name__
raise BaseException(strMessage)
def __init__(self, status=None, dataArray=None, energy=None):
XSDataResult.__init__(self, status)
if energy is None:
self._energy = None
elif energy.__class__.__name__ == "XSDataArray":
self._energy = energy
else:
strMessage = "ERROR! XSDataResultReadDataBM23 constructor argument 'energy' is not XSDataArray but %s" % self._energy.__class__.__name__
raise BaseException(strMessage)
if dataArray is None:
self._dataArray = None
elif dataArray.__class__.__name__ == "XSDataArray":
self._dataArray = dataArray
else:
strMessage = "ERROR! XSDataResultReadDataBM23 constructor argument 'dataArray' is not XSDataArray but %s" % self._dataArray.__class__.__name__
raise BaseException(strMessage)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'beta':
obj_ = XSDataDouble()
obj_.build(child_)
self.setBeta(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'gama':
obj_ = XSDataDouble()
obj_.build(child_)
self.setGama(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'dose_half_th':
obj_ = XSDataDouble()
obj_.build(child_)
self.setDose_half_th(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'dose_half':
obj_ = XSDataDouble()
obj_.build(child_)
self.setDose_half(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'relative_radiation_sensitivity':
obj_ = XSDataDouble()
obj_.build(child_)
self.setRelative_radiation_sensitivity(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'scaleIntensityPlot':
obj_ = XSDataFile()
obj_.build(child_)
self.setScaleIntensityPlot(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'bFactorPlot':
obj_ = XSDataFile()
obj_.build(child_)
self.setBFactorPlot(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'htmlPage':
obj_ = XSDataFile()
obj_.build(child_)
self.setHtmlPage(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'jsonPath':
obj_ = XSDataFile()
obj_.build(child_)
self.setJsonPath(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'actualFile':
obj_ = XSDataFile()
obj_.build(child_)
self.actualFile.append(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'actualMinSize':
obj_ = XSDataInteger()
obj_.build(child_)
self.setActualMinSize(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'timedOut':
obj_ = XSDataBoolean()
obj_.build(child_)
self.setTimedOut(obj_)
XSDataResult.buildChildren(self, child_, nodeName_)