LOCAL_DATASET_PATH_PARAMETERS, FILE_DAP_BS_RE_bit, FILE_DAP_BS, runRescale_bit_log) elapsed_1 = (time.clock() - start_1) print "\t\tTime_1: " + str(elapsed_1) if runRescale_bit_db == 1: start_2 = time.clock() runRescale_bit_db_log = LOCAL_DATASET_PATH_LOG + '/runRescale_bit_db.log' TEMP_FILE = open(runRescale_bit_db_log, 'w') TEMP_FILE.write('Rescale_bitLog\n') TEMP_FILE.close() if haveCy5 == 1: a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_Cy5_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES') if haveTRT == 1: a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_TRI_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES') if haveGFP == 1: a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_GFP_BS_CV_RE_bit, runRescale_bit_db_log, 'ORG_RES') if haveDAP == 1: a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_DAP_BS_RE_bit, runRescale_bit_db_log,
a051_RunResc8bit.main( FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_PARAMETERS, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV, runRescale_bit_log ) if haveDAP == 1: FILE_DAP_BS_RE_bit = FILE_DAP_BS+'_RE_bit' a051_RunResc8bit.main( FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_PARAMETERS, FILE_DAP_BS_RE_bit, FILE_DAP_BS, runRescale_bit_log ) elapsed_1 = (time.clock() - start_1) print "\t\tTime_1: "+str(elapsed_1) if runRescale_bit_db == 1: start_2 = time.clock() runRescale_bit_db_log = LOCAL_DATASET_PATH_LOG +'/runRescale_bit_db.log' TEMP_FILE = open(runRescale_bit_db_log, 'w') TEMP_FILE.write('Rescale_bitLog\n') TEMP_FILE.close() if haveCy5 == 1: a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_Cy5_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' ) if haveTRT == 1: a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_TRI_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' ) if haveGFP == 1: a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_GFP_BS_CV_RE_bit, runRescale_bit_db_log, 'ORG_RES' ) if haveDAP == 1: a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_DAP_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' ) elapsed_2 = (time.clock() - start_2) print "\t\tTime_2: "+str(elapsed_2) print "# ---------------------------------------------------------------------------------------------------------------------------------------" print "# Run Segmentation: "+DATA_FOLDER print "# ---------------------------------------------------------------------------------------------------------------------------------------" if runSegm == 1: start_1 = time.clock() runSegm_log = LOCAL_DATASET_PATH_LOG +'/runSegmentation.log'