LOCAL_DATASET_PATH_PARAMETERS,
FILE_DAP_BS_RE_bit, FILE_DAP_BS,
runRescale_bit_log)
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: " + str(elapsed_1)
if runRescale_bit_db == 1:
start_2 = time.clock()
runRescale_bit_db_log = LOCAL_DATASET_PATH_LOG + '/runRescale_bit_db.log'
TEMP_FILE = open(runRescale_bit_db_log, 'w')
TEMP_FILE.write('Rescale_bitLog\n')
TEMP_FILE.close()
if haveCy5 == 1:
a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_Cy5_BS_RE_bit, runRescale_bit_db_log,
'ORG_RES')
if haveTRT == 1:
a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_TRI_BS_RE_bit, runRescale_bit_db_log,
'ORG_RES')
if haveGFP == 1:
a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_GFP_BS_CV_RE_bit,
runRescale_bit_db_log, 'ORG_RES')
if haveDAP == 1:
a022_Project8bits.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_DAP_BS_RE_bit, runRescale_bit_db_log,
a051_RunResc8bit.main( FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_PARAMETERS, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV, runRescale_bit_log )
if haveDAP == 1:
FILE_DAP_BS_RE_bit = FILE_DAP_BS+'_RE_bit'
a051_RunResc8bit.main( FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_PARAMETERS, FILE_DAP_BS_RE_bit, FILE_DAP_BS, runRescale_bit_log )
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: "+str(elapsed_1)
if runRescale_bit_db == 1:
start_2 = time.clock()
runRescale_bit_db_log = LOCAL_DATASET_PATH_LOG +'/runRescale_bit_db.log'
TEMP_FILE = open(runRescale_bit_db_log, 'w')
TEMP_FILE.write('Rescale_bitLog\n')
TEMP_FILE.close()
if haveCy5 == 1:
a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_Cy5_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' )
if haveTRT == 1:
a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_TRI_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' )
if haveGFP == 1:
a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_GFP_BS_CV_RE_bit, runRescale_bit_db_log, 'ORG_RES' )
if haveDAP == 1:
a022_Project8bits.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_DAP_BS_RE_bit, runRescale_bit_db_log, 'ORG_RES' )
elapsed_2 = (time.clock() - start_2)
print "\t\tTime_2: "+str(elapsed_2)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Run Segmentation: "+DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
if runSegm == 1:
start_1 = time.clock()
runSegm_log = LOCAL_DATASET_PATH_LOG +'/runSegmentation.log'