def __init__(self, nfft, win_step):
def tfc(x):
return np.array([spectrogram(x[ci, :], nfft, win_step) for ci in range(x.shape[0])])
BaseNode.__init__(self)
self.nfft, self.win_step = nfft, win_step
self.n = ApplyOverInstances(tfc)
def __init__(self, nodes, tr_splitter=copy_splitter, te_splitter=copy_splitter, combiner=average_combiner): BaseNode.__init__(self) assert isinstance(nodes, list) self.nodes = nodes self.tr_splitter = tr_splitter self.te_splitter = te_splitter self.combiner = combiner
def __init__(self, isi=10, reest=0.5):
"""
Define a SlowSphering node, with inter-stimulus interval isi in seconds
which is reestimated every reest seconds.
"""
self.isi = isi
self.reest = reest
BaseNode.__init__(self)
def __init__(self, statistic, min_nfeatures=0, threshold=-np.inf): ''' Construct a feature filter that keeps min_nfeatures, or all featurs that score higher than treshold using the statistic function. ''' BaseNode.__init__(self) self.statf = statistic self.min_nfeatures = min_nfeatures self.threshold = threshold
def __init__(self, mdict, heog='hEOG', veog='vEOG', reog='rEOG',
keep_eog=True, eeg=None):
assert sorted(mdict.values()) == ['blink', 'down', 'left', 'right', 'up']
BaseNode.__init__(self)
self.heog = heog
self.veog = veog
self.reog = reog
self.mdict = mdict
self.keep_eog = keep_eog
self.eeg = eeg
def __init__(self, classes=(0,1), reg=0.2, peak_ch=None, time_range=None, spatial_only=False):
BaseNode.__init__(self)
assert type(classes) == int or len(classes) == 2
self.classes = classes
self.reg = reg
self.peak_ch=peak_ch
assert time_range is None or len(time_range) == 2,\
'Time range should be specified as (begin, end)'
self.time_range = time_range
self.spatial_only = spatial_only
def __init__(self, c=np.logspace(-3, 5, 10), kernel=None, **params):
BaseNode.__init__(self)
self.c = np.atleast_1d(c)
self.c_star = np.nan
self.kernel = kernel
self.kernel_params = params
self.nfolds = 5
if 'C' in params.keys():
warnings.warn(
"The SVM's C-parameter has been replaced with a lowercase c.",
DeprecationWarning)
self.c = np.atleast_1d(params['C'])
def __init__(self, alpha=.0, beta=.3, cov_f=lw_cov):
'''
Regularized Discriminant Analysis, Alpaydin, p.98, Eq. 5.29:
S_i^{'} = \alpha \sigma^2I + \beta S + (1 - \alpha - \beta)S_i
alpha = beta = 0 results in a quadratic classfier,
alpha = 0, beta = 1 results in a linear classifier,
alpha = 1, beta = 0 results in a nearest mean classifier.
'''
BaseNode.__init__(self)
self.alpha = float(alpha)
self.beta = float(beta)
self.cov_f = cov_f
def __init__(self, template, shrinkage='oas', center=True):
BaseNode.__init__(self)
self.template = template
self.template = np.atleast_2d(template)
self.center = center
if center:
self.template -= self.template.mean()
if shrinkage == 'oas':
self.cov = OAS
elif shrinkage == 'lw':
self.cov = LedoitWolf
elif shrinkage == 'none':
self.cov = EmpiricalCovariance
elif type(shrinkage) == float or type(shrinkage) == int:
self.cov = ShrunkCovariance(shrinkage=shrinkage)
def __init__(
self,
eeg=[],
eog=None,
bads=None,
ref=[],
bipolar=None,
heog=None,
veog=None,
calc_reog=False,
drop=None,
drop_ref=False,
):
BaseNode.__init__(self)
assert eeg is None or hasattr(eeg, "__iter__"), "Parameter eeg should either be None or a list"
assert eog is None or hasattr(eog, "__iter__"), "Parameter eog should either be None or a list"
assert bads is None or hasattr(bads, "__iter__"), "Parameter bads should either be None or a list"
assert ref is None or hasattr(ref, "__iter__"), "Parameter ref should either be None or a list"
assert bipolar is None or type(bipolar) == dict, "Parameter bipolar should either be None or a dictionary"
if bipolar is not None:
for channels in bipolar.values():
assert len(channels) == 2, "Bipolar channels should be a " "dictionary containing tuples as " "values"
assert heog is None or (
hasattr(heog, "__iter__") and len(heog) == 2
), "Parameter heog should either be None or a tuple"
assert veog is None or (
hasattr(veog, "__iter__") and len(veog) == 2
), "Parameter veog should either be None or a tuple"
self.eeg = eeg
self.eog = None if eog == [] else eog
self.bads = None if bads == [] else bads
self.ref = ref
self.bipolar = None if bipolar == {} else bipolar
self.heog = heog
self.veog = veog
self.calc_reog = calc_reog
self.drop = None if drop == [] else drop
self.drop_ref = drop_ref
def __init__(self, class_i, node): BaseNode.__init__(self) self.class_i = class_i self.node = node
def __init__(self, nodes, critic): BaseNode.__init__(self) self.nodes = list(nodes) self.critic = critic
def __init__(self, W, ftype=None, preserve_feat_lab=False): BaseNode.__init__(self) self.W = W self.ftype = ftype self.preserve_feat_lab = preserve_feat_lab
def __init__(self, rt):
BaseNode.__init__(self)
self.rt = rt
def __init__(self, retain=.95, ndims=None, cov_f=lw_cov): BaseNode.__init__(self) self.retain = float(retain) self.ndims = ndims self.cov_f = cov_f
def __init__(self, nodes):
BaseNode.__init__(self)
self.nodes = list(nodes)
def __init__(self, binary_node): BaseNode.__init__(self) self.binary_node = binary_node
def __init__(self, cia, cib, node): BaseNode.__init__(self) self.cia = cia self.cib = cib self.node = node
def __init__(self, win_size, win_step, ref_point=.5): BaseNode.__init__(self) self.win_size = win_size self.win_step = win_step self.ref_frame = ref_point * self.win_size
def __init__(self, mapping): BaseNode.__init__(self) self.mapping = mapping
