def variation_effects(vrn_file, genome_file, genome_build, config):
"""Calculate effects of variations, associating them with transcripts.
"""
snpeff_vcf, snpeff_txt = snpeff_effects(vrn_file, genome_build, config)
annotated_vcf = annotate_effects(vrn_file, snpeff_vcf, genome_file, config) \
if snpeff_vcf else None
return annotated_vcf, snpeff_txt
def variation_effects(vrn_file, genome_file, genome_build, config):
"""Calculate effects of variations, associating them with transcripts.
"""
snpeff_vcf, snpeff_txt = snpeff_effects(vrn_file, genome_build, config)
annotated_vcf = annotate_effects(vrn_file, snpeff_vcf, genome_file, config) \
if snpeff_vcf else None
return annotated_vcf, snpeff_txt