biochem.flowcell = int(sys.argv[1]) biochem.cycle_name = sys.argv[3] biochem.cycle = biochem.cycle_name[0:3] biochem.cycle_ligation() # usage: biochem_utils.py fcnum flush_flowcell elif method == 'flush_flowcell': reagent = "Wash 1" if reagent == 'Wash 1': port = 9 elif reagent == 'dH2O': port = 7 #biochem.flush_flowcell(port) biochem.rinse(int(sys.argv[1])) # usage: biochem_utils.py fcnum hyb hybValve hybPort # hybValve = [V1..V3] # hybPort = [1..7] elif method == 'hyb': biochem.hyb(sys.argv[3], int(sys.argv[4])) # usage: biochem_utils.py fcnum lig_stepup_peg ligValve ligPort # ligValve = [V1..V3] # port = [1..6]; assumes lig buffer is on port 7 elif method == 'lig_stepup_peg': biochem.lig_stepup_peg(sys.argv[3], int(sys.argv[4]))