Exemplo n.º 1
0
		biochem.flowcell = int(sys.argv[1])
		biochem.cycle_name = sys.argv[3]
		biochem.cycle = biochem.cycle_name[0:3]
		biochem.cycle_ligation()


	# usage: biochem_utils.py fcnum flush_flowcell
	elif method == 'flush_flowcell':
		reagent = "Wash 1"
		if reagent == 'Wash 1':
			port = 9
		elif reagent == 'dH2O':
			port = 7

		#biochem.flush_flowcell(port)
		biochem.rinse(int(sys.argv[1]))


	# usage: biochem_utils.py fcnum hyb hybValve hybPort
	# hybValve = [V1..V3]
	# hybPort = [1..7]
	elif method == 'hyb':
		biochem.hyb(sys.argv[3], int(sys.argv[4]))


	# usage: biochem_utils.py fcnum lig_stepup_peg ligValve ligPort
	# ligValve = [V1..V3]
	# port = [1..6]; assumes lig buffer is on port 7
	elif method == 'lig_stepup_peg':
		biochem.lig_stepup_peg(sys.argv[3], int(sys.argv[4]))