def get(self, hla_allotype_input):
"""
returns leader-peptide allotype(s) of HLA-B allele(s)log fie
"""
try:
hla_allotypes = [allo.strip() for allo in list(set(hla_allotype_input.split(',')))]
results = []
mapper = LeaderMapper()
for hla_allotype in hla_allotypes:
results.append(mapper.get_leader_allotype_info(hla_allotype))
return jsonify(results)
except Exception as e:
return e.__dict__, 500
def step_impl(context):
mapper = LeaderMapper()
leader_info = mapper.get_leader_allotype_info(context.allotype)
context.leader_allotype = leader_info['common_leader']
known = leader_info['known'] or []
context.known = (", ".join(known[0:3]) or "None")
context.exceptions = (leader_info['exceptions'] and ", ".join(
[str(allotype) for allotype in leader_info['exceptions']]) or "None")
context.unknowns = (leader_info['unknowns'] and ", ".join(
[str(allotype) for allotype in leader_info['unknowns'][:3]]) or "None")
def step_impl(context):
mapper = LeaderMapper()
leader_info = mapper.get_leader_allotype_info(context.allotype)
context.leader_allotype = leader_info["common_leader"]
known = leader_info["known"] or []
context.known = ", ".join(known[0:3]) or "None"
context.exceptions = (
leader_info["exceptions"]
and ", ".join([str(allotype) for allotype in leader_info["exceptions"]])
or "None"
)
context.unknowns = (
leader_info["unknowns"]
and ", ".join([str(allotype) for allotype in leader_info["unknowns"][:3]])
or "None"
)