def get(self, hla_allotype_input): """ returns leader-peptide allotype(s) of HLA-B allele(s)log fie """ try: hla_allotypes = [allo.strip() for allo in list(set(hla_allotype_input.split(',')))] results = [] mapper = LeaderMapper() for hla_allotype in hla_allotypes: results.append(mapper.get_leader_allotype_info(hla_allotype)) return jsonify(results) except Exception as e: return e.__dict__, 500
def step_impl(context): mapper = LeaderMapper() leader_info = mapper.get_leader_allotype_info(context.allotype) context.leader_allotype = leader_info['common_leader'] known = leader_info['known'] or [] context.known = (", ".join(known[0:3]) or "None") context.exceptions = (leader_info['exceptions'] and ", ".join( [str(allotype) for allotype in leader_info['exceptions']]) or "None") context.unknowns = (leader_info['unknowns'] and ", ".join( [str(allotype) for allotype in leader_info['unknowns'][:3]]) or "None")
def step_impl(context): mapper = LeaderMapper() leader_info = mapper.get_leader_allotype_info(context.allotype) context.leader_allotype = leader_info["common_leader"] known = leader_info["known"] or [] context.known = ", ".join(known[0:3]) or "None" context.exceptions = ( leader_info["exceptions"] and ", ".join([str(allotype) for allotype in leader_info["exceptions"]]) or "None" ) context.unknowns = ( leader_info["unknowns"] and ", ".join([str(allotype) for allotype in leader_info["unknowns"][:3]]) or "None" )