def test_get_freebayes_vaf_method():
with pysam.VariantFile(fb_vcf) as vcf:
result = get_vaf_method(vcf)
assert_equal(result, _get_freebayes_vaf)
def test_get_strelka_vaf_method():
with pysam.VariantFile(strelka_vcf) as vcf:
result = get_vaf_method(vcf)
assert_equal(result, _get_strelka_vaf)
def test_get_nv_vaf_method():
with pysam.VariantFile(nv_vcf) as vcf:
result = get_vaf_method(vcf)
assert_equal(result, _get_platypus_vaf)