def initialise(self):
loop = [Symbol('_'+x.name) for x in self.index] # symbols for loop
statements = []
for field in self.fields:
body = []
if self.omp:
statements.append(cgen.Pragma('omp for schedule(static,1)'))
# populate xvalue, yvalue zvalue code
for d in range(self.dimension-1, -1, -1):
i = loop[d]
i0 = 0
i1 = ccode(self.dim[d])
pre = []
#velocity_initialisation = cgen.Assign(ccode())
post = []
if d == self.dimension-1:
# inner loop
# first time step
t0 = 0
sol = field.sol.subs(self.t, t0)
for idx in self.index:
sol = sol.subs(idx, '_'+idx.name)
body = [cgen.Assign(ccode(field[[0]+loop]), ccode(sol))]
body = pre + body + post
body = [cgen.For(cgen.InlineInitializer(cgen.Value('int', i), i0), cgen.Line('%s<%s' % (i, i1)), cgen.Line('++%s' % i), cgen.Block(body))]
statements.append(body[0])
statements += self.generate_second_initialisation()
return cgen.Module(statements)
def save_field_block(self, filename, field):
statements = []
statements.append(cgen.Initializer(cgen.Value("int", "dims[]"), "{dim1, dim1, dim1}"))
statements.append(cgen.Initializer(cgen.Value("float", "spacing[]"), "{dx1, dx2, dx3}"))
statements.append(cgen.Assign("std::string vtkfile", "\""+filename+"\" + std::to_string(_ti)"))
statements.append(cgen.Statement("opesci_dump_field_vts_3d(vtkfile, dims, spacing, 2, &"+field+"["+ccode(self.time[len(self.time)-1])+"][0][0][0])"))
return cgen.Module([cgen.Pragma("omp single"), cgen.Block(statements)])
def generate_second_initialisation(self):
loop = [Symbol('_'+x.name) for x in self.index] # symbols for loop
m = self.margin.value
statements = []
v = symbols("v")
for field in self.fields:
body = []
if self.omp:
statements.append(cgen.Pragma('omp for schedule(static,1)'))
# populate xvalue, yvalue zvalue code
for d in range(self.dimension-1, -1, -1):
i = loop[d]
i0 = m
i1 = ccode(self.dim[d]-m)
pre = []
post = []
if d == self.dimension-1:
# inner loop
# first time step
kernel = self.transform_kernel(field)
for arg in kernel.args:
if str(arg).startswith("-") and str(self.t - 1) in str(arg):
kernel = kernel.subs({arg: 0}, simultaneous=True)
arg = 2*v*self.dt
kernel = 0.5*(kernel + arg)
kernel = kernel.subs({self.t: self.time[0]})
for idx in self.index:
kernel = kernel.subs(idx, '_'+idx.name)
body = [cgen.Assign(ccode(field[[self.time[1]]+loop]), ccode(kernel))]
body = pre + body + post
body = [cgen.For(cgen.InlineInitializer(cgen.Value('int', i), i0), cgen.Line('%s<%s' % (i, i1)), cgen.Line('++%s' % i), cgen.Block(body))]
statements.append(body[0])
return statements
def declare_fields(self):
"""
- generate code for declaring fields
- the generated code first declare fields as std::vector
of size=vec_size, then cast to multidimensional array
- return the generated code as string
"""
result = []
arr = '' # = [dim1][dim2][dim3]...
for d in self.dim:
arr += '[' + d.name + ']'
vsize = 1
for d in self.dim:
vsize *= d.value
vsize *= len(self.time)
statements = []
for field in self.fields:
vec = "_%s_vec" % ccode(field.label)
vec_value = cgen.Pointer(cgen.Value(self.real_t, vec))
# alloc aligned memory (on windows and linux)
statements.append(vec_value)
ifdef = cgen.IfDef('_MSC_VER', [cgen.Assign(vec, '(%s*) _aligned_malloc(%s*sizeof(%s), %s)' % (self.real_t, str(vsize), self.real_t, str(self.alignment)))],
[cgen.Statement('posix_memalign((void **)(&%s), %d, %d*sizeof(%s))' % (vec, self.alignment, vsize, self.real_t))])
statements.append(ifdef)
# cast pointer to multidimensional array
cast_pointer = cgen.Initializer(cgen.Value(self.real_t, "(*%s)%s" % (ccode(field.label), arr)), '(%s (*)%s) %s' % (self.real_t, arr, vec))
statements.append(cast_pointer)
vec = "_%s_vec" % ccode("m")
vec_value = cgen.Pointer(cgen.Value(self.real_t, vec))
statements.append(vec_value)
result += statements
return cgen.Module(result)
def time_stepping(self):
"""
generate time index variable for time stepping
e.g. for 2nd order time-accurate scheme, varibales are t0, t1
for 4th order time-accurate scheme, variables are t0, t1, t2, t3
the variables are used to address the field arrays
e.g. in 2nd order scheme, U[t1] will be updated using U[t0]
the variables are calculated by taking mod with time periodicity
return generated code as string
"""
_ti = Symbol('_ti')
body = []
for i in range(len(self.time)):
lhs = self.time[i].name
if i == 0:
rhs = ccode(_ti % self.tp)
else:
rhs = ccode((self.time[i-1]+1) % self.tp)
body.append(cgen.Assign(lhs, rhs))
body = cgen.Block(body)
body = cgen.Module([cgen.Pragma('omp single'), body])
return body
def store_fields(self):
"""Code fragment that stores field arrays to 'grid' struct"""
result = []
for f in self.fields:
assignment = cgen.Assign('grid->%s' % ccode(f.label), '(%s*) %s' % (self.real_t, ccode(f.label))) # There must be a better way of doing this. This hardly seems better than string manipulation
result.append(assignment)
return cgen.Module(result)
def simple_kernel(self, grid_field, indexes):
"""
Generate the inner loop with all fields from stress or velocity
:param grid_field: stress or velocity field array
:param indexes: array with dimension, dimension var, initial margin, final margin
- iterate through fields and replace mako template
- return inner loop code as string
"""
body = []
idx = [self.time[len(self.time)-1]] + self.index
# This loop create the most inner loop with all fields
for field in grid_field:
body.append(cgen.Assign(ccode(field[idx]), ccode(self.kernel_sympy(field))))
body = [cgen.For(cgen.InlineInitializer(cgen.Value('int', indexes[1]), indexes[2]), cgen.Line('%s<%s' % (indexes[1], indexes[3])), cgen.Line('++%s' % indexes[1]), cgen.Block(body))]
if not self.pluto and self.ivdep and indexes[0] == self.dimension-1:
body.insert(0, self.compiler._ivdep)
if not self.pluto and self.simd and indexes[0] == self.dimension-1:
body.insert(0, cgen.Pragma('simd'))
return body
def copy_memory(self):
#data, rowcount, colcount
vec = "_%s_vec" % ccode("m")
statements = [cgen.Assign(vec, 'data')]
return statements
def init_profiling(self):
"""Code fragment that initialises global PAPI counters and events"""
code = [cgen.Assign('profiling->g_%s' % v, 0.0) for v in ['rtime', 'ptime', 'mflops']]
code += [cgen.Assign('profiling->g_%s' % e, 0) for e in self._papi_events]
return cgen.Module(code)