def test_ordered(self):
parameter_list = [["gbar_Na", 120,
cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
uncertain_parameters = parameters.get_from_uncertain("name")
self.assertEqual(uncertain_parameters, ["gbar_Na", "gbar_K", "gbar_L"])
uncertain_parameters = parameters.get("name")
self.assertEqual(uncertain_parameters, ["gbar_Na", "gbar_K", "gbar_L"])
parameter_list = [["gbar_K", 36, cp.Normal(36, 1)],
["gbar_Na", 120,
cp.Uniform(110, 130)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
uncertain_parameters = parameters.get_from_uncertain("name")
self.assertEqual(uncertain_parameters, ["gbar_K", "gbar_Na", "gbar_L"])
uncertain_parameters = parameters.get("name")
self.assertEqual(uncertain_parameters, ["gbar_K", "gbar_Na", "gbar_L"])
uncertain_parameters = parameters.get("value")
self.assertEqual(uncertain_parameters, [36, 120, 0.3])
def test_get_error(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
self.parameters = Parameters(parameter_list)
with self.assertRaises(AttributeError):
self.parameters.get("not_a_parameter")
def test_delitem(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
del parameters["gbar_Na"]
self.assertEqual(len(parameters.parameters), 2)
def test_get_value_list(self):
parameter_list = [["gbar_Na", 120,
cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
self.parameters = Parameters(parameter_list)
result = self.parameters.get("value", ["gbar_Na", "gbar_K"])
self.assertIn(120, result)
self.assertIn(36, result)
def test_get_distribution(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
self.parameters = Parameters(parameter_list)
result = self.parameters.get("distribution")
self.assertEqual(len(result), 3)
self.assertIsInstance(result[0], cp.Dist)
self.assertIsInstance(result[1], cp.Dist)
self.assertIsInstance(result[2], cp.Dist)
def test_get_name(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_l", 0.3, cp.Chi(1, 1, 0.3)]]
self.parameters = Parameters(parameter_list)
result = self.parameters.get()
self.assertIn("gbar_Na", result)
self.assertIn("gbar_K", result)
self.assertIn("gbar_l", result)
def test_iter(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
result = [parameter for parameter in parameters]
self.assertEqual(len(result), 3)
self.assertIsInstance(result[0], Parameter)
self.assertIsInstance(result[1], Parameter)
self.assertIsInstance(result[2], Parameter)
def test_init_list_chaospy(self):
parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)],
["gbar_K", 36, cp.Normal(36, 1)],
["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
self.assertIsInstance(parameters, Parameters)
self.assertIsInstance(parameters["gbar_Na"], Parameter)
self.assertIsInstance(parameters["gbar_K"], Parameter)
self.assertIsInstance(parameters["gbar_L"], Parameter)
self.assertEqual(parameters["gbar_Na"].value, 120)
self.assertEqual(parameters["gbar_K"].value, 36)
self.assertEqual(parameters["gbar_L"].value, 0.3)
self.assertIsInstance(parameters["gbar_Na"].distribution, cp.Dist)
self.assertIsInstance(parameters["gbar_K"].distribution, cp.Dist)
self.assertIsInstance(parameters["gbar_L"].distribution, cp.Dist)
def test_init_list_only_chaospy(self):
parameter_list = [["gbar_Na", cp.Uniform(110, 130)],
["gbar_K", cp.Normal(36, 1)],
["gbar_l", cp.Chi(1, 1, 0.3)]]
parameters = Parameters(parameter_list)
self.assertIsInstance(parameters, Parameters)
self.assertIsInstance(parameters["gbar_Na"], Parameter)
self.assertIsInstance(parameters["gbar_K"], Parameter)
self.assertIsInstance(parameters["gbar_l"], Parameter)
self.assertIsNone(parameters["gbar_Na"].value)
self.assertIsNone(parameters["gbar_K"].value)
self.assertIsNone(parameters["gbar_l"].value)
self.assertIsInstance(parameters["gbar_Na"].distribution, cp.Dist)
self.assertIsInstance(parameters["gbar_K"].distribution, cp.Dist)
self.assertIsInstance(parameters["gbar_l"].distribution, cp.Dist)
