def test_ordered(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) uncertain_parameters = parameters.get_from_uncertain("name") self.assertEqual(uncertain_parameters, ["gbar_Na", "gbar_K", "gbar_L"]) uncertain_parameters = parameters.get("name") self.assertEqual(uncertain_parameters, ["gbar_Na", "gbar_K", "gbar_L"]) parameter_list = [["gbar_K", 36, cp.Normal(36, 1)], ["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) uncertain_parameters = parameters.get_from_uncertain("name") self.assertEqual(uncertain_parameters, ["gbar_K", "gbar_Na", "gbar_L"]) uncertain_parameters = parameters.get("name") self.assertEqual(uncertain_parameters, ["gbar_K", "gbar_Na", "gbar_L"]) uncertain_parameters = parameters.get("value") self.assertEqual(uncertain_parameters, [36, 120, 0.3])
def test_get_error(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] self.parameters = Parameters(parameter_list) with self.assertRaises(AttributeError): self.parameters.get("not_a_parameter")
def test_delitem(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) del parameters["gbar_Na"] self.assertEqual(len(parameters.parameters), 2)
def test_get_value_list(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] self.parameters = Parameters(parameter_list) result = self.parameters.get("value", ["gbar_Na", "gbar_K"]) self.assertIn(120, result) self.assertIn(36, result)
def test_get_distribution(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] self.parameters = Parameters(parameter_list) result = self.parameters.get("distribution") self.assertEqual(len(result), 3) self.assertIsInstance(result[0], cp.Dist) self.assertIsInstance(result[1], cp.Dist) self.assertIsInstance(result[2], cp.Dist)
def test_get_name(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_l", 0.3, cp.Chi(1, 1, 0.3)]] self.parameters = Parameters(parameter_list) result = self.parameters.get() self.assertIn("gbar_Na", result) self.assertIn("gbar_K", result) self.assertIn("gbar_l", result)
def test_iter(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) result = [parameter for parameter in parameters] self.assertEqual(len(result), 3) self.assertIsInstance(result[0], Parameter) self.assertIsInstance(result[1], Parameter) self.assertIsInstance(result[2], Parameter)
def test_init_list_chaospy(self): parameter_list = [["gbar_Na", 120, cp.Uniform(110, 130)], ["gbar_K", 36, cp.Normal(36, 1)], ["gbar_L", 0.3, cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) self.assertIsInstance(parameters, Parameters) self.assertIsInstance(parameters["gbar_Na"], Parameter) self.assertIsInstance(parameters["gbar_K"], Parameter) self.assertIsInstance(parameters["gbar_L"], Parameter) self.assertEqual(parameters["gbar_Na"].value, 120) self.assertEqual(parameters["gbar_K"].value, 36) self.assertEqual(parameters["gbar_L"].value, 0.3) self.assertIsInstance(parameters["gbar_Na"].distribution, cp.Dist) self.assertIsInstance(parameters["gbar_K"].distribution, cp.Dist) self.assertIsInstance(parameters["gbar_L"].distribution, cp.Dist)
def test_init_list_only_chaospy(self): parameter_list = [["gbar_Na", cp.Uniform(110, 130)], ["gbar_K", cp.Normal(36, 1)], ["gbar_l", cp.Chi(1, 1, 0.3)]] parameters = Parameters(parameter_list) self.assertIsInstance(parameters, Parameters) self.assertIsInstance(parameters["gbar_Na"], Parameter) self.assertIsInstance(parameters["gbar_K"], Parameter) self.assertIsInstance(parameters["gbar_l"], Parameter) self.assertIsNone(parameters["gbar_Na"].value) self.assertIsNone(parameters["gbar_K"].value) self.assertIsNone(parameters["gbar_l"].value) self.assertIsInstance(parameters["gbar_Na"].distribution, cp.Dist) self.assertIsInstance(parameters["gbar_K"].distribution, cp.Dist) self.assertIsInstance(parameters["gbar_l"].distribution, cp.Dist)