Python printSequenceFromPdbFile 예제들

예제 #1

파일: test_pdb.py 프로젝트: jakesyl/cing

    def _testPrintSequenceFromPdbFile(self):
        entryId = "1brv" # Small much studied PDB NMR entry
#        entryId = "1hy8" # small, single model, very low scoring entry

        pdbDirectory = os.path.join(cingDirTestsData,"pdb", entryId)
        pdbFileName = "pdb"+entryId+".ent"
        fn = os.path.join( pdbDirectory, pdbFileName)

        self.failIf( os.chdir(cingDirTmp), msg=
            "Failed to change to directory for temporary test files: "+cingDirTmp)
        self.assertFalse(printSequenceFromPdbFile(fn))

예제 #2

파일: test_pdb.py 프로젝트: VuisterLab/cing

    def _testPrintSequenceFromPdbFile(self):
        entryId = "1brv" # Small much studied PDB NMR entry
#        entryId = "1hy8" # small, single model, very low scoring entry

        pdbDirectory = os.path.join(cingDirTestsData,"pdb", entryId)
        pdbFileName = "pdb"+entryId+".ent"
        fn = os.path.join( pdbDirectory, pdbFileName)

        self.failIf( os.chdir(cingDirTmp), msg=
            "Failed to change to directory for temporary test files: "+cingDirTmp)
        self.assertFalse(printSequenceFromPdbFile(fn))

예제 #3

def reportDifference(ccpnProject, fn):
    printSequenceFromCcpnProject(ccpnProject)
    printSequenceFromPdbFile(fn)