def testHspCount(self):
"""
The hspCount function must indicate how many HSPs were found in
total for all the alignments to a title.
"""
hsp1 = HSP(7)
hsp2 = HSP(14)
hsp3 = HSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(3, titleAlignments.hspCount())
def testHspCount(self):
"""
The hspCount function must indicate how many HSPs were found in
total for all the alignments to a title.
"""
hsp1 = HSP(7)
hsp2 = HSP(14)
hsp3 = HSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(3, titleAlignments.hspCount())
def testHspCountZero(self):
"""
The hspCount function must return zero if no reads matched a title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, titleAlignments.hspCount())
def testHspCountZero(self):
"""
The hspCount function must return zero if no reads matched a title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, titleAlignments.hspCount())
