def testReadsEmpty(self):
"""
The reads function must return an empty Reads instance if there are no
reads for the title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, len(titleAlignments.reads()))
def testReadsEmpty(self):
"""
The reads function must return an empty Reads instance if there are no
reads for the title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, len(list(titleAlignments.reads())))
def testReads(self):
"""
The reads function must return a Reads instance with the reads for
the title.
"""
hsp1 = HSP(7)
hsp2 = HSP(14)
hsp3 = HSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read1 = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read1, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read2 = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read2, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual([read1, read2], list(titleAlignments.reads()))
def testReads(self):
"""
The reads function must return a Reads instance with the reads for
the title.
"""
hsp1 = HSP(7)
hsp2 = HSP(14)
hsp3 = HSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read1 = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read1, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read2 = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read2, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual([read1, read2], list(titleAlignments.reads()))
