def test_diag():
v = np.arange(11)
assert_eq(da.diag(v), np.diag(v))
v = da.arange(11, chunks=3)
darr = da.diag(v)
nparr = np.diag(v)
assert_eq(darr, nparr)
assert sorted(da.diag(v).dask) == sorted(da.diag(v).dask)
v = v + v + 3
darr = da.diag(v)
nparr = np.diag(v)
assert_eq(darr, nparr)
v = da.arange(11, chunks=11)
darr = da.diag(v)
nparr = np.diag(v)
assert_eq(darr, nparr)
assert sorted(da.diag(v).dask) == sorted(da.diag(v).dask)
x = np.arange(64).reshape((8, 8))
assert_eq(da.diag(x), np.diag(x))
d = da.from_array(x, chunks=(4, 4))
assert_eq(da.diag(d), np.diag(x))
def test_arange():
darr = da.arange(77, chunks=13)
nparr = np.arange(77)
eq(darr, nparr)
darr = da.arange(2, 13, chunks=5)
nparr = np.arange(2, 13)
eq(darr, nparr)
darr = da.arange(4, 21, 9, chunks=13)
nparr = np.arange(4, 21, 9)
eq(darr, nparr)
# negative steps
darr = da.arange(53, 5, -3, chunks=5)
nparr = np.arange(53, 5, -3)
eq(darr, nparr)
darr = da.arange(77, chunks=13, dtype=float)
nparr = np.arange(77, dtype=float)
eq(darr, nparr)
darr = da.arange(2, 13, chunks=5, dtype=int)
nparr = np.arange(2, 13, dtype=int)
eq(darr, nparr)
assert sorted(da.arange(2, 13, chunks=5).dask) ==\
sorted(da.arange(2, 13, chunks=5).dask)
assert sorted(da.arange(77, chunks=13, dtype=float).dask) ==\
sorted(da.arange(77, chunks=13, dtype=float).dask)
def test_expand_dims(self):
from satpy.resample import NativeResampler
import numpy as np
import dask.array as da
from xarray import DataArray
from pyresample.geometry import AreaDefinition
from pyresample.utils import proj4_str_to_dict
ds1 = DataArray(da.zeros((100, 50), chunks=85), dims=('y', 'x'),
coords={'y': da.arange(100, chunks=85),
'x': da.arange(50, chunks=85)})
proj_dict = proj4_str_to_dict('+proj=lcc +datum=WGS84 +ellps=WGS84 '
'+lon_0=-95. +lat_0=25 +lat_1=25 '
'+units=m +no_defs')
target = AreaDefinition(
'test',
'test',
'test',
proj_dict,
x_size=100,
y_size=200,
area_extent=(-1000., -1500., 1000., 1500.),
)
# source geo def doesn't actually matter
resampler = NativeResampler(None, target)
new_arr = resampler.resample(ds1)
self.assertEqual(new_arr.shape, (200, 100))
new_arr2 = resampler.resample(ds1.compute())
self.assertTrue(np.all(new_arr == new_arr2))
def interpolate_angles(self, angles, resolution):
# FIXME: interpolate in cartesian coordinates if the lons or lats are
# problematic
from geotiepoints.multilinear import MultilinearInterpolator
geocoding = self.root.find('.//Tile_Geocoding')
rows = int(geocoding.find('Size[@resolution="' + str(resolution) + '"]/NROWS').text)
cols = int(geocoding.find('Size[@resolution="' + str(resolution) + '"]/NCOLS').text)
smin = [0, 0]
smax = np.array(angles.shape) - 1
orders = angles.shape
minterp = MultilinearInterpolator(smin, smax, orders)
minterp.set_values(da.atleast_2d(angles.ravel()))
def _do_interp(minterp, xcoord, ycoord):
interp_points2 = np.vstack((xcoord.ravel(),
ycoord.ravel()))
res = minterp(interp_points2)
return res.reshape(xcoord.shape)
x = da.arange(rows, dtype=angles.dtype, chunks=CHUNK_SIZE) / (rows-1) * (angles.shape[0] - 1)
y = da.arange(cols, dtype=angles.dtype, chunks=CHUNK_SIZE) / (cols-1) * (angles.shape[1] - 1)
xcoord, ycoord = da.meshgrid(x, y)
return da.map_blocks(_do_interp, minterp, xcoord, ycoord, dtype=angles.dtype,
chunks=xcoord.chunks)
def geo_mask(self):
"""Masking the space pixels from geometry info."""
cfac = np.uint32(self.proj_info['CFAC'])
lfac = np.uint32(self.proj_info['LFAC'])
coff = np.float32(self.proj_info['COFF'])
loff = np.float32(self.proj_info['LOFF'])
nlines = int(self.data_info['number_of_lines'])
ncols = int(self.data_info['number_of_columns'])
# count starts at 1
local_coff = 1
local_loff = (self.total_segments - self.segment_number) * nlines + 1
xmax, ymax = get_geostationary_angle_extent(self.area)
pixel_cmax = np.rad2deg(xmax) * cfac * 1.0 / 2**16
pixel_lmax = np.rad2deg(ymax) * lfac * 1.0 / 2**16
def ellipse(line, col):
return ((line / pixel_lmax) ** 2) + ((col / pixel_cmax) ** 2) <= 1
cols_idx = da.arange(-(coff - local_coff),
ncols - (coff - local_coff),
dtype=np.float, chunks=CHUNK_SIZE)
lines_idx = da.arange(nlines - (loff - local_loff),
-(loff - local_loff),
-1,
dtype=np.float, chunks=CHUNK_SIZE)
return ellipse(lines_idx[:, None], cols_idx[None, :])
def test_arange_float_step():
darr = da.arange(2., 13., .3, chunks=4)
nparr = np.arange(2., 13., .3)
eq(darr, nparr)
darr = da.arange(7.7, 1.5, -.8, chunks=3)
nparr = np.arange(7.7, 1.5, -.8)
eq(darr, nparr)
def test_arange_float_step():
darr = da.arange(2., 13., .3, blocksize=4)
nparr = np.arange(2., 13., .3)
eq(darr, nparr)
darr = da.arange(7.7, 1.5, -.8, blocksize=3)
nparr = np.arange(7.7, 1.5, -.8)
eq(darr, nparr)
def test_diag():
v = da.arange(11, chunks=3)
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
v = v + v + 3
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
v = da.arange(11, chunks=11)
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
def test_enhance_with_sensor_entry(self):
"""Test enhancing an image with a configuration section."""
from satpy.writers import Enhancer, get_enhanced_image
from xarray import DataArray
import dask.array as da
ds = DataArray(np.arange(1, 11.).reshape((2, 5)),
attrs=dict(name='test1', sensor='test_sensor', mode='L'),
dims=['y', 'x'])
e = Enhancer()
self.assertIsNotNone(e.enhancement_tree)
img = get_enhanced_image(ds, enhancer=e)
self.assertSetEqual(
set(e.sensor_enhancement_configs),
{self.ENH_FN, self.ENH_ENH_FN})
np.testing.assert_almost_equal(img.data.isel(bands=0).max().values,
1.)
ds = DataArray(da.arange(1, 11., chunks=5).reshape((2, 5)),
attrs=dict(name='test1', sensor='test_sensor', mode='L'),
dims=['y', 'x'])
e = Enhancer()
self.assertIsNotNone(e.enhancement_tree)
img = get_enhanced_image(ds, enhancer=e)
self.assertSetEqual(set(e.sensor_enhancement_configs),
{self.ENH_FN, self.ENH_ENH_FN})
np.testing.assert_almost_equal(img.data.isel(bands=0).max().values, 1.)
def test_arange_working_float_step():
"""Sometimes floating point step arguments work, but this could be platform
dependent.
"""
darr = da.arange(3.3, -9.1, -.25, chunks=3)
nparr = np.arange(3.3, -9.1, -.25)
eq(darr, nparr)
def test_arange_float_step():
darr = da.arange(2., 13., .3, chunks=4)
nparr = np.arange(2., 13., .3)
assert_eq(darr, nparr)
darr = da.arange(7.7, 1.5, -.8, chunks=3)
nparr = np.arange(7.7, 1.5, -.8)
assert_eq(darr, nparr)
darr = da.arange(0, 1, 0.01, chunks=20)
nparr = np.arange(0, 1, 0.01)
assert_eq(darr, nparr)
darr = da.arange(0, 1, 0.03, chunks=20)
nparr = np.arange(0, 1, 0.03)
assert_eq(darr, nparr)
def test_repeat():
x = np.random.random((10, 11, 13))
d = da.from_array(x, chunks=(4, 5, 3))
repeats = [1, 2, 5]
axes = [-3, -2, -1, 0, 1, 2]
for r in repeats:
for a in axes:
assert_eq(x.repeat(r, axis=a), d.repeat(r, axis=a))
assert_eq(d.repeat(2, 0), da.repeat(d, 2, 0))
with pytest.raises(NotImplementedError):
da.repeat(d, np.arange(10))
with pytest.raises(NotImplementedError):
da.repeat(d, 2, None)
with pytest.raises(NotImplementedError):
da.repeat(d, 2)
for invalid_axis in [3, -4]:
with pytest.raises(ValueError):
da.repeat(d, 2, axis=invalid_axis)
x = np.arange(5)
d = da.arange(5, chunks=(2,))
assert_eq(x.repeat(3), d.repeat(3))
for r in [1, 2, 3, 4]:
assert all(concat(d.repeat(r).chunks))
def test_histogram_normed_deprecation():
x = da.arange(10)
with pytest.raises(ValueError) as info:
da.histogram(x, bins=[1, 2, 3], normed=True)
assert 'density' in str(info.value)
assert 'deprecated' in str(info.value).lower()
def test_index_with_int_dask_array_nanchunks(chunks):
# Slice by array with nan-sized chunks
a = da.arange(-2, 3, chunks=chunks)
assert_eq(a[a.nonzero()], np.array([-2, -1, 1, 2]))
# Edge case: the nan-sized chunks resolve to size 0
a = da.zeros(5, chunks=chunks)
assert_eq(a[a.nonzero()], np.array([]))
def test_blockwise_new_axes_chunked():
def f(x):
return x[None, :] * 2
x = da.arange(0, 6, 1, chunks=2, dtype=np.int32)
y = da.blockwise(f, 'qa', x, 'a', new_axes={'q': (1, 1)}, dtype=x.dtype)
assert y.chunks == ((1, 1), (2, 2, 2))
assert_eq(y, np.array([[0, 2, 4, 6, 8, 10], [0, 2, 4, 6, 8, 10]], np.int32))
def test_index_with_int_dask_array_indexerror(chunks):
a = da.arange(4, chunks=chunks)
idx = da.from_array([4], chunks=1)
with pytest.raises(IndexError):
a[idx].compute()
idx = da.from_array([-5], chunks=1)
with pytest.raises(IndexError):
a[idx].compute()
def test_dataarray_with_dask_coords():
import toolz
x = xr.Variable('x', da.arange(8, chunks=(4,)))
y = xr.Variable('y', da.arange(8, chunks=(4,)) * 2)
data = da.random.random((8, 8), chunks=(4, 4)) + 1
array = xr.DataArray(data, dims=['x', 'y'])
array.coords['xx'] = x
array.coords['yy'] = y
assert dict(array.__dask_graph__()) == toolz.merge(data.__dask_graph__(),
x.__dask_graph__(),
y.__dask_graph__())
(array2,) = dask.compute(array)
assert not dask.is_dask_collection(array2)
assert all(isinstance(v._variable.data, np.ndarray) for v in array2.coords.values())
def test_diag():
v = da.arange(11, chunks=3)
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
assert sorted(da.diag(v).dask) == sorted(da.diag(v).dask)
v = v + v + 3
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
v = da.arange(11, chunks=11)
darr = da.diag(v)
nparr = np.diag(v)
eq(darr, nparr)
assert sorted(da.diag(v).dask) == sorted(da.diag(v).dask)
def test_arg_reductions_unknown_chunksize(func):
x = da.arange(10, chunks=5)
x = x[x > 1]
with pytest.raises(ValueError) as info:
getattr(da, func)(x)
assert "unknown chunksize" in str(info.value)
def test_map_overlap():
x = da.arange(10, chunks=5)
y = x.map_overlap(lambda x: x + len(x), depth=2, dtype=x.dtype)
assert_eq(y, np.arange(10) + 5 + 2 + 2)
x = da.arange(10, chunks=5)
y = x.map_overlap(lambda x: x + len(x), depth=np.int64(2), dtype=x.dtype)
assert all([(type(s) is int) for s in y.shape])
assert_eq(y, np.arange(10) + 5 + 2 + 2)
x = np.arange(16).reshape((4, 4))
d = da.from_array(x, chunks=(2, 2))
exp1 = d.map_overlap(lambda x: x + x.size, depth=1, dtype=d.dtype)
exp2 = d.map_overlap(lambda x: x + x.size, depth={0: 1, 1: 1},
boundary={0: 'reflect', 1: 'none'}, dtype=d.dtype)
assert_eq(exp1, x + 16)
assert_eq(exp2, x + 12)
def test_vstack():
x = np.arange(5)
y = np.ones(5)
a = da.arange(5, chunks=2)
b = da.ones(5, chunks=2)
assert_eq(np.vstack((x, y)), da.vstack((a, b)))
assert_eq(np.vstack((x, y[None, :])), da.vstack((a, b[None, :])))
def test_average_raises():
d_a = da.arange(11, chunks=2)
with pytest.raises(TypeError):
da.average(d_a, weights=[1, 2, 3])
with pytest.warns(RuntimeWarning):
da.average(d_a, weights=da.zeros_like(d_a)).compute()
def test_out_numpy():
x = da.arange(10, chunks=(5,))
empty = np.empty(10, dtype=x.dtype)
with pytest.raises((TypeError, NotImplementedError)) as info:
np.add(x, 1, out=empty)
assert 'ndarray' in str(info.value)
assert 'Array' in str(info.value)
def test_args_delayed():
x = da.arange(10, chunks=(5,))
y = dask.delayed(lambda: 100)()
z = da.blockwise(add, 'i', x, 'i', y, None, dtype=x.dtype)
assert_eq(z, np.arange(10) + 100)
z = da.blockwise(lambda x, y: x + y, 'i', x, 'i', y=y, dtype=x.dtype)
assert_eq(z, np.arange(10) + 100)
def test_persist_DataArray(persist):
x = da.arange(10, chunks=(5,))
y = DataArray(x)
z = y + 1
n = len(z.data.dask)
zz = persist(z)
assert len(z.data.dask) == n
assert len(zz.data.dask) == zz.data.npartitions
def interpolate_xarray_linear(xpoints, ypoints, values, shape):
"""Interpolate linearly, generating a dask array."""
from scipy.interpolate.interpnd import (LinearNDInterpolator,
_ndim_coords_from_arrays)
points = _ndim_coords_from_arrays(np.vstack((np.asarray(ypoints),
np.asarray(xpoints))).T)
interpolator = LinearNDInterpolator(points, values)
def intp(grid_x, grid_y, interpolator):
return interpolator((grid_y, grid_x))
grid_x, grid_y = da.meshgrid(da.arange(shape[1], chunks=CHUNK_SIZE),
da.arange(shape[0], chunks=CHUNK_SIZE))
# workaround for non-thread-safe first call of the interpolator:
interpolator((0, 0))
res = da.map_blocks(intp, grid_x, grid_y, interpolator=interpolator)
return DataArray(res, dims=('y', 'x'))
def test_atop_numpy_arg():
x = da.arange(10, chunks=(5,))
y = np.arange(1000)
x = x.map_blocks(lambda x, y: x, 1.0)
x = x.map_blocks(lambda x, y: x, 'abc')
x = x.map_blocks(lambda x, y: x, y)
x = x.map_blocks(lambda x, y: x, 'abc')
x = x.map_blocks(lambda x, y: x, 1.0)
x = x.map_blocks(lambda x, y, z: x, 'abc', np.array(['a', 'b'], dtype=object))
assert_eq(x, np.arange(10))
def test_cache():
x = da.arange(15, chunks=5)
y = 2 * x + 1
z = y.cache()
assert len(z.dask) == 3 # very short graph
assert eq(y, z)
cache = np.empty(15, dtype=y.dtype)
z = y.cache(store=cache)
assert len(z.dask) < 6 # very short graph
assert z.chunks == y.chunks
assert eq(y, z)
def test_slicing_with_negative_step_flops_keys():
x = da.arange(10, chunks=5)
y = x[:1:-1]
assert (x.name, 1) in y.dask[(y.name, 0)]
assert (x.name, 0) in y.dask[(y.name, 1)]
assert eq(y, np.arange(10)[:1:-1])
assert y.chunks == ((5, 3),)
assert y.dask[(y.name, 0)] == (getitem, (x.name, 1), (slice(-1, -6, -1),))
assert y.dask[(y.name, 1)] == (getitem, (x.name, 0), (slice(-1, -4, -1),))
def test_arange():
darr = da.arange(77, blocksize=13)
nparr = np.arange(77)
eq(darr, nparr)
darr = da.arange(2, 13, blocksize=5)
nparr = np.arange(2, 13)
eq(darr, nparr)
darr = da.arange(4, 21, 9, blocksize=13)
nparr = np.arange(4, 21, 9)
eq(darr, nparr)
# negative steps
darr = da.arange(53, 5, -3, blocksize=5)
nparr = np.arange(53, 5, -3)
eq(darr, nparr)
darr = da.arange(77, blocksize=13, dtype=float)
nparr = np.arange(77, dtype=float)
eq(darr, nparr)
darr = da.arange(2, 13, blocksize=5, dtype=int)
nparr = np.arange(2, 13, dtype=int)
eq(darr, nparr)
def split(X=None,
y=None,
instance_indexes=None,
test_ratio=0.3,
initial_label_rate=0.05,
split_count=10,
all_class=True):
"""Split given data.
Provide one of X, y or instance_indexes to execute the split.
Parameters
----------
X: array-like, optional
Data matrix with [n_samples, n_features]
y: array-like, optional
labels of given data [n_samples, n_labels] or [n_samples]
instance_indexes: list, optional (default=None)
List contains instances' names, used for image datasets,
or provide index list instead of data matrix.
Must provide one of [instance_names, X, y]
test_ratio: float, optional (default=0.3)
Ratio of test set
initial_label_rate: float, optional (default=0.05)
Ratio of initial label set
e.g. Initial_labelset*(1-test_ratio)*n_samples
split_count: int, optional (default=10)
Random split data _split_count times
all_class: bool, optional (default=True)
Whether each split will contain at least one instance for each class.
If False, a totally random split will be performed.
Giving None to disable saving.
Returns
-------
train_idx: list
index of training set, shape like [n_split_count, n_training_indexes]
test_idx: list
index of testing set, shape like [n_split_count, n_testing_indexes]
label_idx: list
index of labeling set, shape like [n_split_count, n_labeling_indexes]
unlabel_idx: list
index of unlabeling set, shape like [n_split_count, n_unlabeling_indexes]
"""
# check input parameters
if X is None and y is None and instance_indexes is None:
raise Exception("Must provide one of X, y or instance_indexes.")
len_of_parameters = [
len(X) if X is not None else None,
len(y) if y is not None else None,
len(instance_indexes) if instance_indexes is not None else None
]
number_of_instance = np.unique(
[i for i in len_of_parameters if i is not None])
if len(number_of_instance) > 1:
raise ValueError("Different length of instances and _labels found.")
else:
number_of_instance = number_of_instance[0]
if instance_indexes is not None:
instance_indexes = da.array(instance_indexes)
else:
instance_indexes = da.arange(number_of_instance)
# split
train_idx = []
test_idx = []
label_idx = []
unlabel_idx = []
for i in range(split_count):
if (not all_class) or y is None:
rp = randperm(number_of_instance)
cutpoint = int(round((1 - test_ratio) * len(rp)))
tp_train = instance_indexes[rp[0:cutpoint]]
train_idx.append(tp_train)
test_idx.append(instance_indexes[rp[cutpoint:]])
cutpoint = int(round(initial_label_rate * len(tp_train)))
if cutpoint <= 1:
cutpoint = 1
label_idx.append(tp_train[0:cutpoint])
unlabel_idx.append(tp_train[cutpoint:])
else:
if y is None:
raise Exception(
"y must be provided when all_class flag is True.")
if isinstance(y, da.core.Array):
check_array(y, ensure_2d=False, dtype=None, distributed=False)
else:
y = check_array(y,
ensure_2d=False,
dtype=None,
distributed=True)
if y.ndim == 1:
label_num = len(da.unique(y).compute())
else:
label_num = y.shape[1]
if round((1 - test_ratio) * initial_label_rate *
number_of_instance) < label_num:
raise ValueError(
"The initial rate is too small to guarantee that each "
"split will contain at least one instance for each class.")
# check validaty
while 1:
rp = randperm(number_of_instance)
cutpoint = int(round((1 - test_ratio) * len(rp)))
tp_train = instance_indexes[rp[0:cutpoint]]
cutpointlabel = int(round(initial_label_rate * len(tp_train)))
if cutpointlabel <= 1:
cutpointlabel = 1
label_id = tp_train[0:cutpointlabel]
if y.ndim == 1:
if len(da.unique(y[label_id]).compute()) == label_num:
break
else:
temp = da.sum(y[label_id], axis=0)
if not da.any(temp == 0):
break
train_idx.append(tp_train)
test_idx.append(instance_indexes[rp[cutpoint:]])
label_idx.append(tp_train[0:cutpointlabel])
unlabel_idx.append(tp_train[cutpointlabel:])
return compute(train_idx, test_idx, label_idx, unlabel_idx)
def test_dask_array_is_scalar():
# regression test for GH1684
import dask.array as da
y = da.arange(8, chunks=4)
assert not utils.is_scalar(y)
def test_stack_scalars():
d = da.arange(4, chunks=2)
s = da.stack([d.mean(), d.sum()])
assert s.compute().tolist() == [np.arange(4).mean(), np.arange(4).sum()]
def generate_fake_abi_xr_dataset(filename, chunks=None, **kwargs):
"""Create a fake xarray dataset for abi data.
This is an incomplete copy of existing file structures.
"""
dataset = Dataset(attrs={
'time_coverage_start': '2018-03-13T20:30:42.3Z',
'time_coverage_end': '2018-03-13T20:41:18.9Z',
})
projection = DataArray(
[-214748364],
attrs={
'long_name': 'GOES-R ABI fixed grid projection',
'grid_mapping_name': 'geostationary',
'perspective_point_height': 35786023.0,
'semi_major_axis': 6378137.0,
'semi_minor_axis': 6356752.31414,
'inverse_flattening': 298.2572221,
'latitude_of_projection_origin': 0.0,
'longitude_of_projection_origin': -75.0,
'sweep_angle_axis': 'x'
})
dataset['goes_imager_projection'] = projection
if 'C01' in filename or 'C03' in filename or 'C05' in filename:
stop = 10847
step = 2
scale = 2.8e-05
offset = 0.151858
elif 'C02' in filename:
stop = 21693
step = 4
scale = 1.4e-05
offset = 0.151865
else:
stop = 5424
step = 1
scale = 5.6e-05
offset = 0.151844
y = DataArray(
da.arange(0, stop, step),
attrs={
'scale_factor': -scale,
'add_offset': offset,
'units': 'rad',
'axis': 'Y',
'long_name': 'GOES fixed grid projection y-coordinate',
'standard_name': 'projection_y_coordinate'
},
dims=['y'])
dataset['y'] = y
x = DataArray(
da.arange(0, stop, step),
attrs={
'scale_factor': scale,
'add_offset': -offset,
'units': 'rad',
'axis': 'X',
'long_name': 'GOES fixed grid projection x-coordinate',
'standard_name': 'projection_x_coordinate'
},
dims=['x'])
dataset['x'] = x
rad = DataArray(
da.random.randint(0, 1025, size=[len(y), len(x)], dtype=np.int16, chunks=chunks),
attrs={
'_FillValue': np.array(1023),
'long_name': 'ABI L1b Radiances',
'standard_name': 'toa_outgoing_radiance_per_unit_wavelength',
'_Unsigned': 'true',
'sensor_band_bit_depth': 10,
'valid_range': np.array([0, 1022], dtype=np.int16),
'scale_factor': 0.8121064,
'add_offset': -25.936647,
'units': 'W m-2 sr-1 um-1',
'resolution': 'y: 0.000028 rad x: 0.000028 rad',
'grid_mapping': 'goes_imager_projection',
'cell_methods': 't: point area: point'
},
dims=['y', 'x']
)
dataset['Rad'] = rad
sublat = DataArray(0.0, attrs={
'long_name': 'nominal satellite subpoint latitude (platform latitude)',
'standard_name': 'latitude',
'_FillValue': -999.0,
'units': 'degrees_north'})
dataset['nominal_satellite_subpoint_lat'] = sublat
sublon = DataArray(-75.0, attrs={
'long_name': 'nominal satellite subpoint longitude (platform longitude)',
'standard_name': 'longitude',
'_FillValue': -999.0,
'units': 'degrees_east'})
dataset['nominal_satellite_subpoint_lon'] = sublon
satheight = DataArray(35786.023, attrs={
'long_name': 'nominal satellite height above GRS 80 ellipsoid (platform altitude)',
'standard_name': 'height_above_reference_ellipsoid',
'_FillValue': -999.0,
'units': 'km'})
dataset['nominal_satellite_height'] = satheight
yaw_flip_flag = DataArray(0, attrs={
'long_name': 'Flag indicating the spacecraft is operating in yaw flip configuration',
'_Unsigned': 'true',
'_FillValue': np.array(-1),
'valid_range': np.array([0, 1], dtype=np.int8),
'units': '1',
'flag_values': '0 1',
'flag_meanings': 'false true'})
dataset['yaw_flip_flag'] = yaw_flip_flag
return dataset
def setUp(self):
"""Create test data and mock pycoast/pydecorate."""
from trollimage.xrimage import XRImage
from pyresample.geometry import AreaDefinition
import xarray as xr
import dask.array as da
proj_dict = {
'proj': 'lcc',
'datum': 'WGS84',
'ellps': 'WGS84',
'lon_0': -95.,
'lat_0': 25,
'lat_1': 25,
'units': 'm',
'no_defs': True
}
self.area_def = AreaDefinition(
'test',
'test',
'test',
proj_dict,
200,
400,
(-1000., -1500., 1000., 1500.),
)
self.orig_rgb_img = XRImage(
xr.DataArray(da.arange(75., chunks=10).reshape(3, 5, 5) / 75.,
dims=('bands', 'y', 'x'),
coords={'bands': ['R', 'G', 'B']},
attrs={
'name': 'test_ds',
'area': self.area_def
}))
self.orig_l_img = XRImage(
xr.DataArray(da.arange(25., chunks=10).reshape(5, 5) / 75.,
dims=('y', 'x'),
attrs={
'name': 'test_ds',
'area': self.area_def
}))
self.decorate = {
'decorate': [{
'logo': {
'logo_path': '',
'height': 143,
'bg': 'white',
'bg_opacity': 255
}
}, {
'text': {
'txt': 'TEST',
'align': {
'top_bottom': 'bottom',
'left_right': 'right'
},
'font': '',
'font_size': 22,
'height': 30,
'bg': 'black',
'bg_opacity': 255,
'line': 'white'
}
}, {
'scale': {
'colormap': greys,
'extend': False,
'width': 1670,
'height': 110,
'tick_marks': 5,
'minor_tick_marks': 1,
'cursor': [0, 0],
'bg': 'white',
'title': 'TEST TITLE OF SCALE',
'fontsize': 110,
'align': 'cc'
}
}]
}
import_mock = mock.MagicMock()
modules = {
'pycoast': import_mock.pycoast,
'pydecorate': import_mock.pydecorate
}
self.module_patcher = mock.patch.dict('sys.modules', modules)
self.module_patcher.start()
def test_bil_resampling(self, resampler, create_filename, load, savez):
"""Test the bilinear resampler."""
import numpy as np
import dask.array as da
import xarray as xr
from satpy.resample import BilinearResampler
data, source_area, swath_data, source_swath, target_area = get_test_data()
# Test that bilinear resampling info calculation is called,
# and the info is saved
load.side_effect = IOError()
resampler = BilinearResampler(source_swath, target_area)
resampler.precompute(
mask=da.arange(5, chunks=5).astype(np.bool))
resampler.resampler.get_bil_info.assert_called()
resampler.resampler.get_bil_info.assert_called_with()
self.assertFalse(len(savez.mock_calls), 1)
resampler.resampler.reset_mock()
load.reset_mock()
load.side_effect = None
# Test that get_sample_from_bil_info is called properly
fill_value = 8
resampler.resampler.get_sample_from_bil_info.return_value = \
xr.DataArray(da.zeros(target_area.shape), dims=('y', 'x'))
new_data = resampler.compute(data, fill_value=fill_value)
resampler.resampler.get_sample_from_bil_info.assert_called_with(
data, fill_value=fill_value, output_shape=target_area.shape)
self.assertIn('y', new_data.coords)
self.assertIn('x', new_data.coords)
if CRS is not None:
self.assertIn('crs', new_data.coords)
self.assertIsInstance(new_data.coords['crs'].item(), CRS)
self.assertIn('lcc', new_data.coords['crs'].item().to_proj4())
self.assertEqual(new_data.coords['y'].attrs['units'], 'meter')
self.assertEqual(new_data.coords['x'].attrs['units'], 'meter')
# Test that the resampling info is tried to read from the disk
resampler = BilinearResampler(source_swath, target_area)
resampler.precompute(cache_dir='.')
load.assert_called()
# Test caching the resampling info
try:
the_dir = tempfile.mkdtemp()
resampler = BilinearResampler(source_area, target_area)
create_filename.return_value = os.path.join(the_dir, 'test_cache.npz')
load.reset_mock()
load.side_effect = IOError()
resampler.precompute(cache_dir=the_dir)
savez.assert_called()
# assert data was saved to the on-disk cache
self.assertEqual(len(savez.mock_calls), 1)
# assert that load was called to try to load something from disk
self.assertEqual(len(load.mock_calls), 1)
nbcalls = len(resampler.resampler.get_bil_info.mock_calls)
# test reusing the resampler
load.side_effect = None
class FakeNPZ(dict):
def close(self):
pass
load.return_value = FakeNPZ(bilinear_s=1,
bilinear_t=2,
valid_input_index=3,
index_array=4)
resampler.precompute(cache_dir=the_dir)
# we already have things cached in-memory, no need to save again
self.assertEqual(len(savez.mock_calls), 1)
# we already have things cached in-memory, don't need to load
# self.assertEqual(len(load.mock_calls), 1)
self.assertEqual(len(resampler.resampler.get_bil_info.mock_calls), nbcalls)
# test loading saved resampler
resampler = BilinearResampler(source_area, target_area)
resampler.precompute(cache_dir=the_dir)
self.assertEqual(len(load.mock_calls), 2)
self.assertEqual(len(resampler.resampler.get_bil_info.mock_calls), nbcalls)
# we should have cached things in-memory now
# self.assertEqual(len(resampler._index_caches), 1)
finally:
shutil.rmtree(the_dir)
def test_kd_resampling(self, resampler, create_filename, load, savez):
"""Test the kd resampler."""
import numpy as np
import dask.array as da
from satpy.resample import KDTreeResampler
data, source_area, swath_data, source_swath, target_area = get_test_data()
resampler = KDTreeResampler(source_swath, target_area)
resampler.precompute(
mask=da.arange(5, chunks=5).astype(np.bool), cache_dir='.')
resampler.resampler.get_neighbour_info.assert_called()
# swath definitions should not be cached
self.assertFalse(len(savez.mock_calls), 0)
resampler.resampler.reset_mock()
resampler = KDTreeResampler(source_area, target_area)
resampler.precompute()
resampler.resampler.get_neighbour_info.assert_called_with(mask=None)
try:
the_dir = tempfile.mkdtemp()
resampler = KDTreeResampler(source_area, target_area)
create_filename.return_value = os.path.join(the_dir, 'test_cache.npz')
load.side_effect = IOError()
resampler.precompute(cache_dir=the_dir)
# assert data was saved to the on-disk cache
self.assertEqual(len(savez.mock_calls), 1)
# assert that load was called to try to load something from disk
self.assertEqual(len(load.mock_calls), 1)
# we should have cached things in-memory
self.assertEqual(len(resampler._index_caches), 1)
nbcalls = len(resampler.resampler.get_neighbour_info.mock_calls)
# test reusing the resampler
load.side_effect = None
class FakeNPZ(dict):
def close(self):
pass
load.return_value = FakeNPZ(valid_input_index=1,
valid_output_index=2,
index_array=3,
distance_array=4)
resampler.precompute(cache_dir=the_dir)
# we already have things cached in-memory, no need to save again
self.assertEqual(len(savez.mock_calls), 1)
# we already have things cached in-memory, don't need to load
self.assertEqual(len(load.mock_calls), 1)
# we should have cached things in-memory
self.assertEqual(len(resampler._index_caches), 1)
self.assertEqual(len(resampler.resampler.get_neighbour_info.mock_calls), nbcalls)
# test loading saved resampler
resampler = KDTreeResampler(source_area, target_area)
resampler.precompute(cache_dir=the_dir)
self.assertEqual(len(load.mock_calls), 2)
self.assertEqual(len(resampler.resampler.get_neighbour_info.mock_calls), nbcalls)
# we should have cached things in-memory now
self.assertEqual(len(resampler._index_caches), 1)
finally:
shutil.rmtree(the_dir)
fill_value = 8
resampler.compute(data, fill_value=fill_value)
resampler.resampler.get_sample_from_neighbour_info.assert_called_with(data, fill_value)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import pytest
import numpy as np
import dask.array as da
from dask_image.ndmorph import _utils
@pytest.mark.parametrize("err_type, input, structure", [
(RuntimeError, da.ones([1, 2], dtype=bool, chunks=(
1,
2,
)), da.arange(2, dtype=bool, chunks=(2, ))),
(TypeError, da.arange(2, dtype=bool, chunks=(2, )), 2.0),
])
def test_errs__get_structure(err_type, input, structure):
with pytest.raises(err_type):
_utils._get_structure(input, structure)
@pytest.mark.parametrize("err_type, iterations", [
(TypeError, 0.0),
(NotImplementedError, 0),
])
def test_errs__get_iterations(err_type, iterations):
with pytest.raises(err_type):
_utils._get_iterations(iterations)
@pytest.mark.parametrize("err_type, input, mask", [
def test_array_reduction_out(func):
x = da.arange(10, chunks=(5, ))
y = da.ones((10, 10), chunks=(4, 4))
func(y, axis=0, out=x)
assert_eq(x, func(np.ones((10, 10)), axis=0))
def test_arange_dtypes(start, stop, step, dtype):
a_np = np.arange(start, stop, step, dtype=dtype)
a_da = da.arange(start, stop, step, dtype=dtype, chunks=-1)
assert_eq(a_np, a_da)
def test_arange():
darr = da.arange(77, chunks=13)
nparr = np.arange(77)
assert_eq(darr, nparr)
darr = da.arange(2, 13, chunks=5)
nparr = np.arange(2, 13)
assert_eq(darr, nparr)
darr = da.arange(4, 21, 9, chunks=13)
nparr = np.arange(4, 21, 9)
assert_eq(darr, nparr)
# negative steps
darr = da.arange(53, 5, -3, chunks=5)
nparr = np.arange(53, 5, -3)
assert_eq(darr, nparr)
darr = da.arange(77, chunks=13, dtype=float)
nparr = np.arange(77, dtype=float)
assert_eq(darr, nparr)
darr = da.arange(2, 13, chunks=5, dtype=int)
nparr = np.arange(2, 13, dtype=int)
assert_eq(darr, nparr)
assert sorted(da.arange(2, 13, chunks=5).dask) == sorted(
da.arange(2, 13, chunks=5).dask)
assert sorted(da.arange(77, chunks=13, dtype=float).dask) == sorted(
da.arange(77, chunks=13, dtype=float).dask)
# 0 size output
darr = da.arange(0, 1, -0.5, chunks=20)
nparr = np.arange(0, 1, -0.5)
assert_eq(darr, nparr)
darr = da.arange(0, -1, 0.5, chunks=20)
nparr = np.arange(0, -1, 0.5)
assert_eq(darr, nparr)
# Unexpected or missing kwargs
with pytest.raises(TypeError, match="whatsthis"):
da.arange(10, chunks=-1, whatsthis=1)
assert da.arange(10).chunks == ((10, ), )
def test_gh3579():
assert_eq(np.arange(10)[0::-1], da.arange(10, chunks=3)[0::-1])
assert_eq(np.arange(10)[::-1], da.arange(10, chunks=3)[::-1])
def test_index_with_int_dask_array_negindex(chunks):
a = da.arange(4, chunks=chunks)
idx = da.from_array([-1, -4], chunks=1)
assert_eq(a[idx], np.array([3, 0]))
def test_map_overlap_multiarray_uneven_numblocks_exception():
x = da.arange(10, chunks=(10, ))
y = da.arange(10, chunks=(5, 5))
with pytest.raises(ValueError):
# Fail with chunk alignment explicitly disabled
da.map_overlap(lambda x, y: x + y, x, y, align_arrays=False).compute()
def test_map_overlap_no_depth(boundary):
x = da.arange(10, chunks=5)
y = x.map_overlap(lambda i: i, depth=0, boundary=boundary, dtype=x.dtype)
assert_eq(y, x)
def _initialize_clusters(n_el, n_clusters, chunks=None):
""" Initialize cluster array """
cluster_idx = da.mod(da.arange(n_el, chunks=(chunks or n_el)), n_clusters)
return da.random.permutation(cluster_idx)
def get_test_data(input_shape=(100, 50), output_shape=(200, 100), output_proj=None,
input_dims=('y', 'x')):
"""Get common data objects used in testing.
Returns: tuple with the following elements
input_data_on_area: DataArray with dimensions as if it is a gridded
dataset.
input_area_def: AreaDefinition of the above DataArray
input_data_on_swath: DataArray with dimensions as if it is a swath.
input_swath: SwathDefinition of the above DataArray
target_area_def: AreaDefinition to be used as a target for resampling
"""
from xarray import DataArray
import dask.array as da
from pyresample.geometry import AreaDefinition, SwathDefinition
from pyresample.utils import proj4_str_to_dict
ds1 = DataArray(da.zeros(input_shape, chunks=85),
dims=input_dims,
attrs={'name': 'test_data_name', 'test': 'test'})
if input_dims and 'y' in input_dims:
ds1 = ds1.assign_coords(y=da.arange(input_shape[-2], chunks=85))
if input_dims and 'x' in input_dims:
ds1 = ds1.assign_coords(x=da.arange(input_shape[-1], chunks=85))
if input_dims and 'bands' in input_dims:
ds1 = ds1.assign_coords(bands=list('RGBA'[:ds1.sizes['bands']]))
input_proj_str = ('+proj=geos +lon_0=-95.0 +h=35786023.0 +a=6378137.0 '
'+b=6356752.31414 +sweep=x +units=m +no_defs')
source = AreaDefinition(
'test_target',
'test_target',
'test_target',
proj4_str_to_dict(input_proj_str),
input_shape[1], # width
input_shape[0], # height
(-1000., -1500., 1000., 1500.))
ds1.attrs['area'] = source
if CRS is not None:
crs = CRS.from_string(input_proj_str)
ds1 = ds1.assign_coords(crs=crs)
ds2 = ds1.copy()
input_area_shape = tuple(ds1.sizes[dim] for dim in ds1.dims
if dim in ['y', 'x'])
geo_dims = ('y', 'x') if input_dims else None
lons = da.random.random(input_area_shape, chunks=50)
lats = da.random.random(input_area_shape, chunks=50)
swath_def = SwathDefinition(
DataArray(lons, dims=geo_dims),
DataArray(lats, dims=geo_dims))
ds2.attrs['area'] = swath_def
if CRS is not None:
crs = CRS.from_string('+proj=latlong +datum=WGS84 +ellps=WGS84')
ds2 = ds2.assign_coords(crs=crs)
# set up target definition
output_proj_str = ('+proj=lcc +datum=WGS84 +ellps=WGS84 '
'+lon_0=-95. +lat_0=25 +lat_1=25 +units=m +no_defs')
output_proj_str = output_proj or output_proj_str
target = AreaDefinition(
'test_target',
'test_target',
'test_target',
proj4_str_to_dict(output_proj_str),
output_shape[1], # width
output_shape[0], # height
(-1000., -1500., 1000., 1500.),
)
return ds1, source, ds2, swath_def, target
def test_reshape_array_3d(self):
"""Test the chunk stacking on 3d arrays."""
from pyresample.gradient import reshape_to_stacked_3d
data = da.arange(432).reshape((3, 12, 12)).rechunk((3, 4, 6))
res = reshape_to_stacked_3d(data)
assert(res.shape == (3, 4, 6, 6))
def test_coarsen_with_excess():
x = da.arange(10, chunks=5)
assert_eq(da.coarsen(np.min, x, {0: 3}, trim_excess=True),
np.array([0, 5]))
assert_eq(da.coarsen(np.sum, x, {0: 3}, trim_excess=True),
np.array([0 + 1 + 2, 5 + 6 + 7]))
def test_arange_has_dtype():
assert da.arange(5, chunks=2).dtype == np.arange(5).dtype
def write_component_model(self, comps, ref_freq, mask, row_chunks,
chan_chunks):
print("Writing model data at full freq resolution", file=log)
order, npix = comps.shape
comps = da.from_array(comps, chunks=(-1, -1))
mask = da.from_array(mask.squeeze(), chunks=(-1, -1))
writes = []
for ims in self.ms:
xds = xds_from_ms(ims,
group_cols=('FIELD_ID', 'DATA_DESC_ID'),
chunks={
'row': (row_chunks, ),
'chan': (chan_chunks, )
},
columns=('MODEL_DATA', 'UVW'))
# subtables
ddids = xds_from_table(ims + "::DATA_DESCRIPTION")
fields = xds_from_table(ims + "::FIELD", group_cols="__row__")
spws = xds_from_table(ims + "::SPECTRAL_WINDOW",
group_cols="__row__")
pols = xds_from_table(ims + "::POLARIZATION", group_cols="__row__")
# subtable data
ddids = dask.compute(ddids)[0]
fields = dask.compute(fields)[0]
pols = dask.compute(pols)[0]
out_data = []
for ds in xds:
field = fields[ds.FIELD_ID]
radec = field.PHASE_DIR.data.squeeze()
if not np.array_equal(radec, self.radec):
continue
spw = spws[ds.DATA_DESC_ID]
freq = spw.CHAN_FREQ.data.squeeze()
freq_bin_idx = da.arange(0,
freq.size,
1,
chunks=freq.chunks,
dtype=np.int64)
freq_bin_counts = da.ones(freq.size,
chunks=freq.chunks,
dtype=np.int64)
uvw = ds.UVW.data
model_vis = getattr(ds, 'MODEL_DATA').data
model = model_from_comps(comps, freq, mask, ref_freq)
vis = im2vis(uvw,
freq,
model,
freq_bin_idx,
freq_bin_counts,
self.cell,
nthreads=self.nthreads,
epsilon=self.epsilon,
do_wstacking=self.do_wstacking)
model_vis = populate_model(vis, model_vis)
out_ds = ds.assign(
**
{self.model_column: (("row", "chan", "corr"), model_vis)})
out_data.append(out_ds)
writes.append(
xds_to_table(out_data, ims, columns=[self.model_column]))
dask.compute(writes, scheduler='single-threaded')
assert type(ddc._meta) is type(ddc.compute())
else:
assert_eq(ddc, ddc) # Check that _meta and computed arrays match types
assert_eq(ddc, ddn, check_type=False)
@pytest.mark.parametrize("dtype", ["f4", "f8"])
def test_sizeof(dtype):
c = cupy.random.random((2, 3, 4), dtype=dtype)
assert sizeof(c) == c.nbytes
@pytest.mark.skipif(not _numpy_120, reason="NEP-35 is not available")
@pytest.mark.parametrize(
"arr", [np.arange(5), cupy.arange(5), da.arange(5), da.from_array(cupy.arange(5))]
)
@pytest.mark.parametrize(
"like", [np.arange(5), cupy.arange(5), da.arange(5), da.from_array(cupy.arange(5))]
)
def test_asanyarray(arr, like):
if isinstance(like, np.ndarray) and isinstance(
da.utils.meta_from_array(arr), cupy.ndarray
):
with pytest.raises(TypeError):
a = da.utils.asanyarray_safe(arr, like=like)
else:
a = da.utils.asanyarray_safe(arr, like=like)
assert type(a) is type(like)
def create_jitter_noise(channel,
x_jit,
y_jit,
frame_osf,
frame_time,
key,
opt,
visualize=False):
outputPointingTL = create_output_pointing_timeline(
x_jit, y_jit, frame_osf, ndrCumSeq=channel.ndr_cumulative_sequence)
jitter_x = channel.osf * (x_jit / channel.opt.plate_scale()).simplified
jitter_y = channel.osf * (y_jit / channel.opt.plate_scale()).simplified
fp_units = channel.fp.units
fp = channel.fp.magnitude
osf = np.int32(channel.osf)
offs = np.int32(channel.offs)
magnification_factor = np.ceil(
max(3.0 / jitter_x.std(), 3.0 / jitter_y.std()))
if (magnification_factor > 1):
try:
mag = np.int(magnification_factor.item()) | 1
except:
mag = np.int(magnification_factor) | 1
fp = exolib.oversample(fp, mag)
#### See ExoSim Issue 42, for following.
# fp = np.where(fp >= 0.0, fp, 1e-10)
osf *= mag
offs = mag * offs + mag // 2
jitter_x *= mag
jitter_y *= mag
if opt.noise.EnableSpatialJitter() != 'True': jitter_y *= 0.0
if opt.noise.EnableSpectralJitter() != 'True': jitter_x *= 0.0
jitter_x = np.round(jitter_x)
jitter_y = np.round(jitter_y)
noise = np.zeros((int(fp.shape[0] // osf), int(fp.shape[1] // osf),
0)).astype(np.float32)
# multiple orders reshaping
if (hasattr(channel.opt, "dispersion")
and (isinstance(channel.opt.dispersion, list))):
exosim_msg(
"Using Dask for parellized processing of timeline datacube...")
cores = opt.common.num_cores
lim = cores // len(channel.opt.dispersion)
indxRanges = np.arange(0, lim + 1) * channel.tl_shape[2] // lim
# need to separate the "fake" focal planes so that they don't bleed into one another
# when jitter is applied.
client = Client(n_workers=cores,
memory_limit=f'{opt.common.gb_per_core}GB')
temp_shape = (noise.shape[0],
noise.shape[1] // len(channel.opt.dispersion), 0)
fp = np.array(np.split(fp, len(channel.opt.dispersion), 1))
results = []
for d, _ in enumerate(channel.opt.dispersion):
jitters = []
for i in range(len(indxRanges) - 1):
startIdx = int(indxRanges[i])
endIdx = int(indxRanges[i + 1])
tfp = fp[d].astype(np.float32)
tosf = osf.astype(np.int32)
tndr = channel.ndr_sequence[startIdx:endIdx].astype(np.int32)
tndrs = channel.ndr_cumulative_sequence[
startIdx:endIdx].astype(np.int32)
tfosf = frame_osf.astype(np.int32)
tjitx = jitter_x.magnitude.astype(np.int32)
tjity = jitter_y.magnitude.astype(np.int32)
txoff = offs.astype(np.int32)
tyoff = offs.astype(np.int32)
jitter = delayed(c_create_jitter_noise)(tfp,
tosf,
tndr,
tndrs,
tfosf,
tjitx,
tjity,
x_offs=txoff,
y_offs=tyoff)
jitters.append(jitter)
result = da.concatenate([
da.from_delayed(
jit,
dtype='float32',
shape=(temp_shape[0], temp_shape[1], endIdx - startIdx))
for jit in jitters
],
axis=2)
results.append(result)
noise = da.stack(results, axis=0)
noise = da.concatenate((noise[da.arange(noise.shape[0])]), axis=1)
if visualize:
noise.visualize(filename='exosim-dask-noise.png')
noise = noise.compute()
client.close()
else:
indxRanges = np.arange(0, 7) * channel.tl_shape[2] // 6
for i in range(len(indxRanges) - 1):
startIdx = int(indxRanges[i])
endIdx = int(indxRanges[i + 1])
noise = np.append(
noise,
c_create_jitter_noise(
fp.astype(np.float32),
osf.astype(np.int32),
channel.ndr_sequence[startIdx:endIdx].astype(np.int32),
channel.ndr_cumulative_sequence[startIdx:endIdx].astype(
np.int32),
frame_osf.astype(np.int32),
jitter_x.magnitude.astype(np.int32),
jitter_y.magnitude.astype(np.int32),
x_offs=offs.astype(np.int32),
y_offs=offs.astype(np.int32)).astype(np.float32),
axis=2)
## Multiply units to noise in 2 steps, to avoid
## Quantities memmory inefficiency
qq = channel.ndr_sequence * fp_units * frame_time
noise = noise * qq
return noise, outputPointingTL
def test_arange():
darr = da.arange(77, chunks=13)
nparr = np.arange(77)
assert_eq(darr, nparr)
darr = da.arange(2, 13, chunks=5)
nparr = np.arange(2, 13)
assert_eq(darr, nparr)
darr = da.arange(4, 21, 9, chunks=13)
nparr = np.arange(4, 21, 9)
assert_eq(darr, nparr)
# negative steps
darr = da.arange(53, 5, -3, chunks=5)
nparr = np.arange(53, 5, -3)
assert_eq(darr, nparr)
darr = da.arange(77, chunks=13, dtype=float)
nparr = np.arange(77, dtype=float)
assert_eq(darr, nparr)
darr = da.arange(2, 13, chunks=5, dtype=int)
nparr = np.arange(2, 13, dtype=int)
assert_eq(darr, nparr)
assert (sorted(da.arange(2, 13, chunks=5).dask) == sorted(
da.arange(2, 13, chunks=5).dask))
assert (sorted(da.arange(77, chunks=13, dtype=float).dask) == sorted(
da.arange(77, chunks=13, dtype=float).dask))
# 0 size output
darr = da.arange(0, 1, -0.5, chunks=20)
nparr = np.arange(0, 1, -0.5)
assert_eq(darr, nparr)
darr = da.arange(0, -1, 0.5, chunks=20)
nparr = np.arange(0, -1, 0.5)
assert_eq(darr, nparr)
def test_empty_array():
assert eq(np.arange(0), da.arange(0, chunks=5))
def test_array_ufunc_out():
x = da.arange(10, chunks=(5,))
np.sin(x, out=x)
np.add(x, 10, out=x)
assert_eq(x, np.sin(np.arange(10)) + 10)
def test_unsupported_ufunc_methods():
x = da.arange(10, chunks=(5,))
with pytest.raises(TypeError):
assert np.add.reduce(x)
def test_out_shape_mismatch():
x = da.arange(10, chunks=(5,))
y = da.arange(15, chunks=(5,))
with pytest.raises(ValueError):
assert np.log(x, out=y)
def test_arange_cast_float_int_step():
darr = da.arange(3.3, -9.1, -.25, chunks=3, dtype='i8')
nparr = np.arange(3.3, -9.1, -.25, dtype='i8')
assert_eq(darr, nparr)
def test_setitem_extended_API_2d_rhs_func_of_lhs():
# Cases:
# * RHS and/or indices are a function of the LHS
# * Indices have unknown chunk sizes
# * RHS has extra leading size 1 dimensions compared to LHS
x = cupy.arange(60).reshape((6, 10))
chunks = (2, 3)
dx = da.from_array(x, chunks=chunks)
dx[2:4, dx[0] > 3] = -5
x[2:4, x[0] > 3] = -5
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[2, dx[0] < -2] = -7
x[2, x[0] < -2] = -7
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[dx % 2 == 0] = -8
x[x % 2 == 0] = -8
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[dx % 2 == 0] = -8
x[x % 2 == 0] = -8
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[3:5, 5:1:-2] = -dx[:2, 4:1:-2]
x[3:5, 5:1:-2] = -x[:2, 4:1:-2]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[0, 1:3] = -dx[0, 4:2:-1]
x[0, 1:3] = -x[0, 4:2:-1]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[...] = dx
x[...] = x
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[...] = dx[...]
x[...] = x[...]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[0] = dx[-1]
x[0] = x[-1]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[0, :] = dx[-2, :]
x[0, :] = x[-2, :]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[:, 1] = dx[:, -3]
x[:, 1] = x[:, -3]
assert_eq(x, dx.compute())
index = da.from_array([0, 2], chunks=(2,))
dx = da.from_array(x, chunks=chunks)
dx[index, 8] = [99, 88]
x[[0, 2], 8] = [99, 88]
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=chunks)
dx[:, index] = dx[:, :2]
x[:, [0, 2]] = x[:, :2]
assert_eq(x, dx.compute())
index = da.where(da.arange(3, chunks=(1,)) < 2)[0]
dx = da.from_array(x, chunks=chunks)
dx[index, 7] = [-23, -33]
x[index.compute(), 7] = [-23, -33]
assert_eq(x, dx.compute())
index = da.where(da.arange(3, chunks=(1,)) < 2)[0]
dx = da.from_array(x, chunks=chunks)
dx[(index,)] = -34
x[(index.compute(),)] = -34
assert_eq(x, dx.compute())
index = index - 4
dx = da.from_array(x, chunks=chunks)
dx[index, 7] = [-43, -53]
x[index.compute(), 7] = [-43, -53]
assert_eq(x, dx.compute())
index = da.from_array([0, -1], chunks=(1,))
x[[0, -1]] = 9999
dx[(index,)] = 9999
assert_eq(x, dx.compute())
dx = da.from_array(x, chunks=(-1, -1))
dx[...] = da.from_array(x, chunks=chunks)
assert_eq(x, dx.compute())
# Both tests below fail in CuPy due to leading singular dimensions
if False:
# RHS has extra leading size 1 dimensions compared to LHS
dx = da.from_array(x.copy(), chunks=(2, 3))
v = x.reshape((1, 1) + x.shape)
x[...] = v
dx[...] = v
assert_eq(x, dx.compute())
index = da.where(da.arange(3, chunks=(1,)) < 2)[0]
v = -cupy.arange(12).reshape(1, 1, 6, 2)
x[:, [0, 1]] = v
dx[:, index] = v
assert_eq(x, dx.compute())
