def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "Binary UCSC %s file" % self._name
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = 'Image in %s format' % dataset.extension
dataset.blurb = data.nice_size(dataset.get_size())
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "Gemini SQLite Database, version %s" % ( dataset.metadata.gemini_version or 'unknown' )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "Gemini SQLite Database, version %s" % ( dataset.metadata.gemini_version or 'unknown' )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, **kwd ):
if not dataset.dataset.purged:
dataset.peek = "Binary RGenetics file"
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = "HTML file"
dataset.blurb = data.nice_size(dataset.get_size())
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "HTML file"
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = 'Image in %s format' % dataset.extension
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = "Binary ab1 sequence file"
dataset.blurb = data.nice_size(dataset.get_size())
else:
dataset.peek = "file does not exist"
dataset.blurb = "file purged from disk"
def set_peek(self, dataset, **kwd):
if not dataset.dataset.purged:
dataset.peek = "Binary RGenetics file"
dataset.blurb = data.nice_size(dataset.get_size())
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "Binary UCSC %s file" % self._name
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = 'binary data'
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
export_url = "/history_add_to?" + urlencode( {'history_id':dataset.history_id,'ext':'ab1','name':'ab1 sequence','info':'Sequence file','dbkey':dataset.dbkey} )
dataset.peek = "Binary ab1 sequence file"
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = 'binary data'
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
zip_file = zipfile.ZipFile( dataset.file_name, "r" )
num_files = len( zip_file.namelist() )
dataset.peek = "Archive of %s binary sequence files" % ( str( num_files ) )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
zip_file = zipfile.ZipFile( dataset.file_name, "r" )
num_files = len( zip_file.namelist() )
dataset.peek = "Archive of %s files" % ( str( num_files ) )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.sequences:
dataset.blurb = "%s sequences" % util.commaify( str( dataset.metadata.sequences ) )
else:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.sequences:
dataset.blurb = "%s sequences" % util.commaify( str( dataset.metadata.sequences ) )
else:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
if line_count is None:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.blurb = "%s lines, 454 Quality score file" % util.commaify( str( line_count ) )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "SQLite Database"
lines = ['SQLite Database']
if dataset.metadata.tables:
for table in dataset.metadata.tables:
try:
lines.append('%s [%s]' % (table,dataset.metadata.table_row_count[table]))
except:
continue
dataset.peek = '\n'.join(lines)
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = "SQLite Database"
lines = ['SQLite Database']
if dataset.metadata.tables:
for table in dataset.metadata.tables:
try:
lines.append('%s [%s]' % (table,dataset.metadata.table_row_count[table]))
except:
continue
dataset.peek = '\n'.join(lines)
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary UCSC %s file (%s)" % ( self._name, data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Media (OGG) file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary sff file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary bam alignments file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek(self, dataset):
try:
return dataset.peek
except:
return "Text sequence file archive (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Video (AVI) file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary file archive (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "SQLite Database (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek(self, dataset):
try:
return dataset.peek
except:
return "Binary TwoBit format nucleotide file (%s)" % (data.nice_size(dataset.get_size()))
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = "Binary TwoBit format nucleotide file"
dataset.blurb = data.nice_size(dataset.get_size())
else:
return super(TwoBit, self).set_peek(dataset, is_multi_byte)
def display_peek(self, dataset):
try:
return dataset.peek
except:
return "454 Quality score file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek(self, dataset):
try:
return dataset.peek
except:
return 'Binary sra file (%s)' % (data.nice_size(
dataset.get_size()))
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = "Binary TwoBit format nucleotide file"
dataset.blurb = data.nice_size(dataset.get_size())
else:
return super(TwoBit, self).set_peek(dataset, is_multi_byte)
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary ab1 sequence file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek(self, dataset):
try:
return dataset.peek
except:
return "Binary TwoBit format nucleotide file (%s)" % (data.nice_size(dataset.get_size()))
def set_peek(self, dataset):
dataset.peek = "HTML file (%s)" % (data.nice_size(dataset.get_size()))
dataset.blurb = data.nice_size(dataset.get_size())
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "SQLite Database (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Compressed binary file (%s)" % ( data.nice_size( dataset.get_size() ) )
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Audio (MP3) file (%s)" % ( data.nice_size( dataset.get_size() ) )
def set_peek(self, dataset):
dataset.peek = 'Image in %s format (%s)' % (
dataset.extension, data.nice_size(dataset.get_size()))
dataset.blurb = 'image'
def set_peek( self, dataset ):
dataset.peek = "HTML file (%s)" % ( data.nice_size( dataset.get_size() ) )
dataset.blurb = data.nice_size( dataset.get_size() )
def display_peek(self, dataset):
try:
return dataset.peek
except:
return "Compressed binary file (%s)" % (data.nice_size(
dataset.get_size()))
def display_peek( self, dataset ):
try:
return dataset.peek
except:
return "Binary UCSC %s file (%s)" % ( self._name, data.nice_size( dataset.get_size() ) )
def set_peek( self, dataset ):
dataset.peek = 'Image in %s format (%s)' % ( dataset.extension, data.nice_size( dataset.get_size() ) )
dataset.blurb = 'image'
