from de.embl.cmci.seg import NucSegRitsukoProject as NSP from ij import IJ from ij import ImagePlus imp = IJ.openImage("http://imagej.nih.gov/ij/images/blobs.gif"); #imp = IJ.openImage("http://imagej.nih.gov/ij/images/m51.zip"); imp = IJ.openImage('/Volumes/D/Julia20130201-/NucleusSegmentationStudy/20130320/L1CH2_maxp_300-374-6.tif') nsp = NSP() res = nsp.binarize(imp.getProcessor(), 0.1); ImagePlus("result", res).show()