from ij import IJ, ImagePlus, Prefs from de.embl.cmci.seg import NucSegRitsukoProject from ij.gui import Roi #imp = IJ.getImage() imp = IJ.openImage('/Users/miura/Dropbox/examples/blobsBInary.tif') nrp = NucSegRitsukoProject(); #binimp = nrp.eliminateEdgeObjects(subip) imp.show() Prefs.blackBackground = True binip = nrp.cleanEdge(imp) binip.invertLut() #ImagePlus("binimage", subip).show() ImagePlus("binimage", binip).show()