def update_sample(self,
lims_id: str,
sex=None,
target_reads: int = None,
name: str = None,
**kwargs):
"""Update information about a sample."""
lims_sample = Sample(self, id=lims_id)
if sex:
lims_gender = REV_SEX_MAP.get(sex)
if lims_gender:
lims_sample.udf[PROP2UDF["sex"]] = lims_gender
if name:
lims_sample.name = name
if isinstance(target_reads, int):
lims_sample.udf[PROP2UDF["target_reads"]] = target_reads
for key, value in kwargs.items():
if not PROP2UDF.get(key):
raise LimsDataError(
f"Unknown how to set {key} in LIMS since it is not defined in {PROP2UDF}"
)
lims_sample.udf[PROP2UDF[key]] = value
lims_sample.put()
def update_sample(self,
lims_id: str,
sex=None,
application: str = None,
target_reads: int = None):
"""Update information about a sample."""
lims_sample = Sample(self, id=lims_id)
if sex:
lims_gender = REV_SEX_MAP.get(sex)
if lims_gender:
lims_sample.udf[PROP2UDF['sex']] = lims_gender
if application:
lims_sample.udf[PROP2UDF['application']] = application
if isinstance(target_reads, int):
lims_sample.udf[PROP2UDF['target_reads']] = target_reads
lims_sample.put()