def test_multichange():
# timing for performance test
t0 = time.time()
# sending data to main function
data_path = "../data/result/test2_result"
write_path = " ../data/result/test2_result"
strain_num = 6268
# calling the main function
reader(data_path, write_path, strain_num)
# call(["bgzip","../data/result/test2_result_result.vcf"])
# generatig checksums
crossval_hash = hash("../data/test/test2.vcf.gz")
result_hash = hash("../data/result/test2_result_result.vcf.gz")
#validating checksums
assert crossval_hash == result_hash
# printing time outputs
t1 = time.time()
print " Extra test 1:" + str(t1 - t0)
def test_multiChange():
# timing the function for performance
t0 = time.time()
#sending data to main function
data_path = "../data/result/test1_result"
write_path = "../data/result/test1_result"
strain_num = 6268
#calling main function
reader(data_path, write_path, strain_num)
# compressing the results to .vcf.gz
call(["bgzip", "../data/result/test1_result_result.vcf"])
# generating checksum for validation
test_hash = hash("../data/test/test1.vcf.gz")
result_hash = hash("../data/result/test1_result_result.vcf.gz")
# asserting test validation
assert test_hash == result_hash
#printing time results
t1 = time.time()
print "SNP Multichange time:" + str(t1 - t0)
def test1_test():
# timing the function for performance testing
t0 = time.time()
#sending data to main function
data_path = "../data/test/test1"
write_path = "../data/result/test1"
strain_num = 6268
#calling main function
reader(data_path, write_path, strain_num)
#compressing the file
call(["bgzip", "../data/result/test1_result.vcf"])
#asserting the results
crossval_hash = hash("../data/cross_validation/test1_crossval.vcf.gz")
result_hash = hash("../data/result/test1_result.vcf.gz")
assert crossval_hash == result_hash
#printing tie results
t1 = time.time()
print "Time for snp change :" + str(t1 - t0)
def test2_test():
# timing for performance test
t0 = time.time()
#sending data to main function
data_path = "../data/test/test2"
write_path = "../data/result/test2"
strain_num = 6268
# calling main fucntion
reader(data_path, write_path, strain_num)
# compressing file to .vcf.gz
call(["bgzip", "../data/result/test2_result.vcf"])
# generating checksums
crossval_hash = hash("../data/cross_validation/test2_crossval.vcf.gz")
result_hash = hash("../data/result/test2_result.vcf.gz")
# validating checksums
assert crossval_hash == result_hash
#printing time results
t1 = time.time()
print "Indel test time: " + str(t1 - t0)
def userSignup(args, sessid=0):
# password or site-precookie
# password is manually chosen, but site pre-cookie should be computed from hash(siteid + rootcookie)
if not MULTIUSER and sessid > 0:
raise ValueError("Multiuser not enabled, sessid > 0 not allowed.")
password = args.password
# global userid
salt = randstr(SALTLEN)
passwordhash = hash(password)
# always compute checks to prevent timing attacks,
# that could guess if password is in use.
not_new = passwordhash in data.salts
not_rare = ALLOWUSERPASSWORDS and not rare(password)
if not_new or not_rare:
raise ValueError(SIGNUPFAIL)
return
userid = randstr(IDLEN)
while(userid in data.users): #theoretically this could infinite loop, but when are we gonna have that many users?
userid = randstr(IDLEN)
username = args.username or ""
email = args.email or ""
if username in data.names:
raise ValueError("Sorry, that username is taken.")
return
if email in data.emails:
raise ValueError("Sorry, that email address is taken.")
sitecookie = hash(password + salt) # store this entire salt, because it is strictly private on the server.
data.authhashes.addRow(*authHashes(userid, password, AUTHHASHES))
data.authhashes.save()
data.cookies.addRow(sitecookie, userid, salt)
data.cookies.save()
data.salts.addRow(passwordhash, salt)
data.salts.save()
data.users.addRow(userid, username, email, sitecookie)
data.users.save()
if len(username):
data.names.addRow(username, userid)
data.names.save()
if len(email):
data.emails.addRow(email, userid, False)
data.emails.save()
print(f" New user created.")
print(f" User Id: '{userid}'")
print(f" SiteCookie: '{sitecookie}'")
name = username
if len(name) == 0:
name = userid
def estimateEdgeWeight(self, a, b):
estimated_weight = math.inf
for i in range(self.d):
node_a = hash(a, self.order, i)
node_b = hash(b, self.order, i)
if self.matrices[i][node_a][node_b] < estimated_weight:
estimated_weight = self.matrices[i][node_a][node_b]
return estimated_weight
def autoSignup(args, sessid=0):
password = randstr(AUTOPASSLEN)
passwordhash = hash(password)
while(passwordhash in data.salts): #theoretically this could infinite loop, but when are we gonna have that many users?
password = randstr(AUTOPASSLEN)
passwordhash = hash(password)
SignupArguments = namedtuple('Arguments', "username password email")
signupargs = SignupArguments(args.username, password, args.email)
userSignup(signupargs, sessid)
print(" Password: " + password)
def authHashes(userid, password, n):
result = []
result.append(userid)
for i in range(n):
salt = randstr(SALTLEN)
authcookie = hash(password + salt)
authhash = hash(authcookie)
publicsalt = salt[:SALTLEN-SALTSECRET]
result.append(publicsalt)
result.append(authhash)
return result
def updatePublicAccount(userid = None, currencylookup = None, newbalance = None, balancechange = None):
# TODO test this
if userid == None:
raise ValueError("cannot update account for 'None' user.")
if currencylookup == None:
raise ValueError("cannot update a 'None' account.")
if newbalance == None and balancechange == None:
raise ValueError("newbalance or balancechange required to update account.")
if newbalance != None and balancechange != None:
raise ValueError("updatePublicAccount: newbalance and balancechange were both specified. Choose one, not both.")
if not currencylookup in data.currencylookup:
raise ValueError("updatePublicAccount: there was no matching currency for provided 'currencylookup'")
currencyid = data.currencylookup[currencylookup].CurrencyId
privacctid = userid + ":" + currencyid
exists = privacctid in data.privaccts
balance = 0
pubacctid = None
if exists:
pubacctid = data.privaccts[privacctid].AcctId
acct = data.pubaccts[pubacctid]
balance = int(acct.Balance)
else:
pubacctid = randstr(IDLEN)
while(pubacctid in data.pubaccts): #theoretically this could infinite loop, but when are we gonna have that many users?
pubacctid = randstr(IDLEN)
if balancechange != None:
assert isinstance(balancechange, int), "balancechange was not an integer"
newbalance = balance + balancechange
assert isinstance(newbalance, int), "balancechange was not an integer"
if newbalance < 0:
raise ValueError("balance may not be less than zero.")
user = data.users[userid]
sitecookie = user.SiteCookie
sitepostcookie = hash(sitecookie)
acctversion = randstr(IDLEN)
acctsecret = hash(pubacctid + ":" + acctversion + ":" + sitepostcookie)
accthash = hash(pubacctid + ":" + userid + ":" + acctsecret)
if exists:
del data.pubaccts[pubacctid]
else:
data.privaccts.addRow(privacctid, pubacctid)
data.pubaccts.addRow(pubacctid, acctversion, accthash, currencyid, newbalance)
def addEdge(self, a, b, weight):
for i in range(self.d):
hashed_a = hash(a, self.order, i)
hashed_b = hash(b, self.order, i)
if hashed_a not in self.matrices[i]:
self.matrices[i][hashed_a] = {}
if hashed_b not in self.matrices[i][hashed_a]:
self.matrices[i][hashed_a][hashed_b] = 0
self.matrices[i][hashed_a][hashed_b] += weight
if not self.directed:
if hashed_b not in self.matrices[i]:
self.matrices[i][hashed_b] = {}
if hashed_a not in self.matrices[i][hashed_b]:
self.matrices[i][hashed_b][hashed_a] = 0
self.matrices[i][hashed_b][hashed_a] += weight
def userLoginPassword(args, sessid=0):
if not MULTIUSER and sessid > 0:
raise ValueError("Multiuser not enabled, sessid > 0 not allowed.")
password = args.password
passwordhash = hash(password)
if not passwordhash in data.salts:
print("Unknown user password.")
return
salt = data.salts[passwordhash].Salt
cookie = hash(password + salt)
# print("salt", salt)
# print("cookie", cookie)
CookieArguments = namedtuple('Arguments', "cookie")
cookieargs = CookieArguments(cookie)
userLoginCookie(cookieargs, sessid)
def add(db, hash_value, file_path, label, verbose):
if hash_value is None:
db.put(hash(file_path),
bytes(file_path.stem if label is None else label, "utf-8"))
if verbose:
sys.stderr.write('New entry: "' + str(file_path) +
'" with label "' + label.decode("utf-8") + '"\n')
def append(self, node):
new_head = 1
if self.empty:
self.empty = False
else:
new_head = self.head + 1
self.data[new_head] = {}
self.data[new_head]['pointer'] = self.head
self.data[new_head]['node'] = node
if new_head == 1:
self.data[new_head]['hash'] = None
else:
self.data[new_head]['hash'] = hash(
int(dict_to_binary(self.data[self.head])), self.generator,
self.prime, self.length)
node_to_sign = dict_to_text(self.data[new_head])
z, c, t = sign(node_to_sign, self.pri_key, self.length, self.generator,
self.prime)
self.data[new_head]['sign'] = (z, c, t)
self.head = new_head
def __init__ (self, key, block_size = 64):
self.block_size = block_size
ipadblock = 0x36
opadblock = 0x5c
# for i in range (0,block_size):
# ipad = (ipad << 8) + 0x36
# opad = (opad << 8) + 0x5c
self.key = key
self.keylen = 0
self.keystr = ""
while (key != 0):
self.keystr = chr(key % 256) + self.keystr
key >>= 8
self.keylen += 1
if (self.keylen > self.block_size):
self.keyhash = hash()
self.k0str = self.keyhash.parsing(self.keystr)
self.k0str += chr(0) * (self.block_size- len(self.k0str))
else:
self.k0str = self.keystr + chr(0) * (self.block_size - len(self.keystr))
self.kistr = ""
self.kostr = ""
for i in range (0, len (self.k0str)):
self.kistr += chr(ord (self.k0str[i]) ^ ipadblock)
self.kostr += chr(ord (self.k0str[i]) ^ opadblock)
def create_content(db, id, name):
pass_char_options = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ1234567890!£$%&*@#-_+=?'
password = ''
salt = ''
for i in range(16):
password += pass_char_options[random.randint(
1,
len(pass_char_options) - 1)]
for i in range(8):
salt += pass_char_options[random.randint(1,
len(pass_char_options) - 1)]
hashed_pass = hash.hash(password + salt)
c = db.cursor()
username = '******' % (name.lower()[0], name.lower()[name.index(' ') + 1:])
email = '*****@*****.**' % (
(name.lower()[0], name.lower()[name.index(' ') + 1:]))
c.execute(
'INSERT INTO users (userid, username, name, hash, salt, email) VALUES (?,?,?,?,?,?)',
(id, username, name, hashed_pass, salt, email))
date = datetime.datetime.now() - datetime.timedelta(28)
for i in range(random.randrange(4, 8)):
content = 'Some random text for item %d' % (i)
title = 'Item %d' % (i)
date = date + datetime.timedelta(random.randrange(1, 3),
minutes=random.randrange(1, 120),
hours=random.randrange(0, 6))
c.execute(
'INSERT INTO posts (creator,date,title,content) VALUES (?,?,?,?)',
(id, date.timestamp(), title, content))
def processURL(url):
# Hash URL
token = hash(url)
siv.v2json(url, token)
return token
def main(verbose, database, mode, timestamp, label, path):
""" Tool to lookup known file hashes """
mode = 'c' if mode is None else mode
if database == DEFAULT_DB_PATH:
database_folder = database.split("/").pop()
database = environ['HOME'] + "/" + database_folder
db = plyvel.DB(database, create_if_missing=True)
path = set(path)
if len(path) == 0:
path.add(".")
for path in path:
for file_path in walk_paths(path):
hash_value = db.get(hash(file_path))
if mode == 'a':
add(db, hash_value, file_path, label, verbose)
elif mode == 'c':
check(timestamp, hash_value, file_path)
elif mode == 'u':
update(db, hash_value, file_path, verbose)
db.close()
def constructGraph(self, input_graph):
# apply hash function on all nodes in graph
# get buckets of nodes
# convert the graph into its new representation
for i in range(self.d):
self.matrices[i] = {}
matrix = self.matrices[i]
for node in input_graph:
hashed_node = hash(node, self.w, i)
if hashed_node not in matrix:
matrix[hashed_node] = {}
for adjacent_node in input_graph[node]:
hashed_adjacent_node = hash(adjacent_node, self.l, i)
if hashed_adjacent_node not in matrix[hashed_node]:
matrix[hashed_node][hashed_adjacent_node] = 0
matrix[hashed_node][hashed_adjacent_node] += input_graph[
node][adjacent_node]
def find_most_similar(image, resource_dir='resources'):
"""
find_most_similar
:param image - PIL resource
:param resource_dir Resource directory
:return Name of what the image probably is
"""
lst = []
# Hash the image
hashed_image = hash(image)
# Go through all resources in resource directory
for name in os.listdir(resource_dir):
# Join the path names
path = os.path.join(resource_dir, name)
# Go through all images in new paths
for fp in os.listdir(path):
# Load other image
compared = Image.open(os.path.join(path, fp))
# If images are the same, return the name of the image
if image == compared:
return name
else:
# Otherwise append to the list the name, and hashed value comparison
lst.append({
'name': name,
'value': hash(compared) - hashed_image
})
def comp(a):
"""
comp
What key is the comparison being run on?
"""
return a['value']
# Sort list with custom key
lst.sort(key=comp)
# Return the most likely chance
return lst[0]['name']
def generateProductMapping(product, productCodeMap = {}, duplicateList = []):
key = hash.hash(product)
if (key in productCodeMap and productCodeMap[key] != [product]):
productCodeMap[key].append(product)
duplicateList.append(key)
return 1
else:
productCodeMap[key] = [product]
return 0
def titles_hash(data_path):
movie_titles = hash(2**15)
with open(data_path, 'r') as movies_csv:
csv_reader = csv.reader(movies_csv)
next(csv_reader, None)
for row in csv_reader:
movie_titles.add(int(row[0]), row[1])
return movie_titles
def signup(email, password, push_token):
salt = str(uuid.uuid4())
password = hash.hash(password, salt)
sql = """
INSERT INTO User (email, salt, password, push_token)
VALUES(?, ?, ?, ?);
"""
query_db(sql, [email, salt, password, push_token])
return query_db("SELECT * FROM User WHERE email=?;", [email], one=True)
def read_ratings(movies_data, ratings_data):
movies_info = hash(2**15)
users_info = hash(2**18)
with open(movies_data, 'r') as movies_csv:
csv_reader = csv.reader(movies_csv)
next(csv_reader, None)
for row in csv_reader:
movies_info.add(int(row[0]), [row[2].split('|'), [], 0])
with open(ratings_data, 'r') as ratings_csv:
csv_reader = csv.reader(ratings_csv)
next(csv_reader, None)
for row in csv_reader:
#movies_info operations
data = movies_info.get(int(row[1]))[0]
data[1].append(float(row[2]))
data[2] += 1
movies_info.update(int(row[1]), data)
#users_info operations
data = users_info.get(int(row[0]))[0]
if not data:
users_info.add(int(row[0]), [[int(row[1])], [float(row[2])]])
else:
data[0].append(row[1])
data[1].append(row[2])
users_info.update(int(row[0]), data)
for cell in movies_info.data:
if cell != None:
if cell[1][2]:
sum = 0
for rating in cell[1][1]:
sum += rating
cell[1][1] = sum / cell[1][2]
else:
cell[1][1] = 0
return movies_info, users_info
def verify(message, z, c, t, length, generator, prime, pub_key):
print("Verifying the signature")
m_binary = ''.join(format(ord(i), 'b') for i in message)
if c == hash(int(bin(t) + m_binary, 2), generator, prime, length):
if (pow(pub_key, c, prime) * t) % prime == pow(generator, z, prime):
return True
else:
return False
else:
return False
def verify(message, z, c, t, length, generator, prime, pub_key):
print("Verifying the signature")
m_binary = ''.join(format(ord(i), 'b') for i in message)
if c == hash(int(bin(t) + m_binary, 2), generator, prime, length):
if (pow(pub_key, c, prime) * t) % prime == pow(generator, z, prime):
return "Signs and message match"
else:
return "Signs are incorrect"
else:
return "Message is not the same"
def webtext(url):
i = url
nr = requests.get(i)
nowtext = hash.hash(nr.text)
print(deftext)
print(nowtext)
if nowtext != deftext:
return (
'There is a possibility that this page has been tampered with.')
else:
return ('OK')
def verify(message, signature, public_key):
# hash the message
h = hash(message)
# load the verification module
verifier = DSS.new(public_key, 'deterministic-rfc6979')
try:
verifier.verify(h, signature)
return True
except ValueError:
return False
def brute_force_random_find(h, l):
c = 0
s = ""
while h != hash.hash(s):
s = new_random_guess(l)
c += 1
if c % 1000000 == 0:
sys.stdout.write(".")
sys.stdout.flush()
sys.stdout.write("\n")
return c, s
def test3_test():
#timing for performance test
t0 = time.time()
data_path = "../data/test/test3"
write_path = " ../data/result/test3"
strain_num = 6268
print reader(data_path, write_path, strain_num)
call(["bgzip","test3_result.vcf"])
crossval_hash = hash("../data/cross_validation/test3_crossval.vcf.gz")
result_hash = hash("../data/result/test3_result.vcf.gz")
assert crossval_hash == result_hash
t1 = time.time()
print "Time for test 3:" + (t1-t0)
def createCheck(args, sessid=0):
userid = getUser(sessid)
if userid == None:
raise ValueError(f"You must be logged in to issue a check.")
lookup = args.currency + ":" + NAMESPACE;
currencyid = getCurrencyId(lookup)
amt = int(args.amount)
updatePublicAccount(userid, lookup, balancechange = -amt)
checksecret = randstr(IDLEN)
checkhash = hash(checksecret)
while(checkhash in data.checks):
checksecret = randstr(IDLEN)
checkhash = hash(checksecret)
data.checks.addRow(checkhash, currencyid, amt)
data.checks.save()
data.pubaccts.save()
print(f"Check Secret: \"{checksecret}\"")
print(f"Check issued for {amt} units of {lookup}")
def login():
if request.method == "GET":
return render_template("login.html")
else:
name = request.form["name"]
password = request.form["password"]
user = db_session.query(User).filter_by(name=name).first()
if user is None or user.password != hash(password):
return render_template("login.html",
error="Invalid Username or Password")
session["name"] = name
return redirect(url_for("dashboard"))
def remove_multiples(p, n):
print('removing multiples')
prime = []
htsize = n
hash_table = [[]]*htsize
for py in p:
#print('processing ',py)
py_hash = hash.hash(py[0], py[1], htsize)
#print('checking entry ', py_hash, hash_table[py_hash])
if py in hash_table[py_hash]:
#print('skipping')
continue
#print('appending ', py)
prime.append(list(py))
py_mult = list(py)
while py_mult[0] < n:
#print('in while: ', py_mult, n)
h = hash.hash(py_mult[0], py_mult[1], htsize)
hash_table[h].append(list(py_mult))
#print('appending ', py_mult, ' in position ', h)
py_mult[0] += py[0]
py_mult[1] += py[1]
return prime
def sign(message, key_storage='privatekey.pem'):
# load the private key for signing:
f = open(key_storage, 'rt')
private_key = ECC.import_key(f.read())
# hash the message
h = hash(message)
# sign with the private key
signer = DSS.new(private_key, 'deterministic-rfc6979')
signature = signer.sign(h)
# reurn the signature
return signature
def execucao_hash(pag_tam, pag_quant): # Método de execução da hash
arquivo = open('dados.csv')
linhas = csv.reader(arquivo)
ini = time.time()
auxhash = hash(pag_tam, pag_quant)
for linha in linhas:
if linha[0] == '+':
auxhash.inserir(int(linha[1]))
linhas = csv.reader(arquivo)
for linha in linhas:
if linha[0] == '-':
auxhash.remover(int(linha[1]))
fim = time.time()
arquivo.close()
return (fim - ini)
def generateProductMappingFromCSV(filename, productCodeMap = {},
duplicateList = []):
import csv
with open(filename, 'rU') as productsFile:
productsList = csv.reader(productsFile, delimiter=' ', quotechar='|')
for row in productsList:
product = ' '.join(row)
key = hash.hash(product)
if (key in productCodeMap and productCodeMap[key] != product):
productCodeMap[key].append(product)
duplicateList.append(key);
else:
productCodeMap[key] = [product]
return productCodeMap, duplicateList
def test_known(self):
self.assertEqual(680131659347, hash.hash('leepadg'))
def update (self, mess):
self.hash1 = hash()
self.hash2 = hash()
return self.hash2.parsing (self.kostr + self.hash1.parsing(self.kistr + mess))
def hash_function(self, key, size):
return hash(key, size)