def create_args(output): return ["run", "assembler_benchmark", "bioboxes/quast", "--input-fasta={}".format(helper.verification_file('assembler_benchmark/assembly.fasta')), "--input-ref={}".format(helper.verification_file('assembler_benchmark/references')), "--output={}".format(output), "--no-rm"]
def create_args(output): return [ "run", "assembler_benchmark", "bioboxes/quast", "--input-fasta={}".format( helper.verification_file('assembler_benchmark/assembly.fasta')), "--input-ref={}".format( helper.verification_file('assembler_benchmark/references')), "--output={}".format(output), "--no-rm" ]
def create_args(output): return ["run", "short_read_assembler", "bioboxes/velvet", "--input={}".format(helper.verification_file('short_read_assembler/genome_paired_reads.fq.gz')), "--output={}".format(output), "--no-rm"]
def create_args(output): return [ "run", "short_read_assembler", "bioboxes/velvet", "--input={}".format( helper.verification_file( 'short_read_assembler/genome_paired_reads.fq.gz')), "--output={}".format(output), "--no-rm" ]